Gene Card
Gene overview
cDNA / CDS / Protein Sequences
885 bp · LXL04_030516|LXL04_030516|OH1004|cDNA
ATGCTGGTACCGATGGCTGCCAAGGAGATTGCTGCAGCTTTTTCGGCAACAGAGGGCTACCGGTGTTGGCGTTTTCCGGAAGCAGATCGTAGACGTCGGGAGGGGGTTGTGGTGGTGGTGAGTCTCGATCAGGTACATCGATCGTTGCCTCTTATCTACAATTCTGCCATTACTGTTCGATTACTTACTTTGATATTGTCGTTGTTGACAAGTGGATTGGAGACTTCGACTGAAATCCGTCCTCTGCAGCACCACTTCCG...
885 bp · LXL04_030516|LXL04_030516|OH1004|CDS
ATGCTGGTACCGATGGCTGCCAAGGAGATTGCTGCAGCTTTTTCGGCAACAGAGGGCTACCGGTGTTGGCGTTTTCCGGAAGCAGATCGTAGACGTCGGGAGGGGGTTGTGGTGGTGGTGAGTCTCGATCAGGTACATCGATCGTTGCCTCTTATCTACAATTCTGCCATTACTGTTCGATTACTTACTTTGATATTGTCGTTGTTGACAAGTGGATTGGAGACTTCGACTGAAATCCGTCCTCTGCAGCACCACTTCCG...
Protein
Download Protein FASTA294 aa · LXL04_030516|LXL04_030516|OH1004|PROTEIN
MLVPMAAKEIAAAFSATEGYRCWRFPEADRRRREGVVVVVSLDQVHRSLPLIYNSAITVRLLTLILSLLTSGLETSTEIRPLQHHFRPTKQEYLYYLTIVIPRFNSEEVSGQNQVKAFVQRKIRQSIADEYPGLELVMDDLLPKKSPLIVAKCQNHLNLVVVNNILLFFNIRDGPYTRTLRLLHQYPTKFVLAGANIMCPGLTSLGGILDEEVGAETPVNYAASCTCKFVNGSILQHCEGISDVGVTRVKHLLQLILGII...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030516 |
|---|---|
| TK1151 ID | TkA04G475090 |
| OH-1004 ID | LXL04_030516 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 83.700 |
| Protein coverage (%) | TK1151 71.271 / OH-1004 39.796Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030516 |
|---|---|
| Location | Chr06:117958742-117960587 (+) |
| Description | Similar to mcts1: Malignant T-cell-amplified sequence 1 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001731 formation of translation preinitiation complex Biological Process GO:0002188 translation reinitiation Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006974 DNA damage response Biological Process GO:0032790 ribosome disassembly Biological Process GO:0075522 IRES-dependent viral translational initiation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0000339 RNA cap binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003743 translation initiation factor activity Molecular Function GO:0043024 ribosomal small subunit binding Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0271910 hsa:28985 mmu:66405 rno:302500 xla:503679 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17832.8Pre-PUA106-187 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030516 | PF17832.8 | Pre-PUA | 106 | 187 | 2.2e-21 | 76.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.