LXL04_030294 | RubberDandelionOmics

Gene overview

LXL04_030294

Reference: OH-1004 Chr: Chr06 Coordinates: 113703275-113704382 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

954 bp · LXL04_030294|LXL04_030294|OH1004|cDNA

ATGCCGATCCCTGTTATCGACTTCTCTAAGCTCAATGGCGAAGAGAGAGCTACAACAATGGCGAAGATCGCAAATGGATGCGAAGAATGGGGATTCTTTCAGTTGGTGAATCATGGGATTCCGGTGGAGCTTCTTGAGAGGGTGAAAAAGGTGAGCACCGAGTGCTATAAGTTAGAGAGAGAAGAACACTTTTTCAAAGAATCGCCACCCGTAAAGCTGTTGAAGGAGATAATCGACAAGAAAAGTGAAGACAAGGTTGA...

CDS

Download CDS FASTA

954 bp · LXL04_030294|LXL04_030294|OH1004|CDS

ATGCCGATCCCTGTTATCGACTTCTCTAAGCTCAATGGCGAAGAGAGAGCTACAACAATGGCGAAGATCGCAAATGGATGCGAAGAATGGGGATTCTTTCAGTTGGTGAATCATGGGATTCCGGTGGAGCTTCTTGAGAGGGTGAAAAAGGTGAGCACCGAGTGCTATAAGTTAGAGAGAGAAGAACACTTTTTCAAAGAATCGCCACCCGTAAAGCTGTTGAAGGAGATAATCGACAAGAAAAGTGAAGACAAGGTTGA...

Protein

Download Protein FASTA

317 aa · LXL04_030294|LXL04_030294|OH1004|PROTEIN

MPIPVIDFSKLNGEERATTMAKIANGCEEWGFFQLVNHGIPVELLERVKKVSTECYKLEREEHFFKESPPVKLLKEIIDKKSEDKVDNMDWEDVFLLSDDNEWPPKTQGFKETMTEYRAELKKLAEKLMEVMDENLGIPKGSIKKAFNGGEGEKAFFGTKVSHYPPCSHPEMVTGLRAHTDAGGVILLFQDDVVGGLEILKDGNWTDVQPIPNSIVINTGDQIEVLSNGRYKSVWHRVQAMPNGTRRSIASFYNPSFNAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030294`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030294

Location Chr06:113703275-113704382 (-)

Description Similar to At1g77330: 1-aminocyclopropane-1-carboxylate oxidase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g77330`	Enzyme involved in the ethylene biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030294 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009693 ethylene biosynthetic process Biological Process

GO:0009835 fruit ripening Biological Process

GO:0071398 cellular response to fatty acid Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity Molecular Function

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G77330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.794

Rank 1 · LXL04_030294 · OH-1004

Nucleus0.291

Rank 2 · LXL04_030294 · OH-1004

Mitochondrion0.063

Rank 3 · LXL04_030294 · OH-1004

Peroxisome0.063

Rank 4 · LXL04_030294 · OH-1004

Endoplasmic reticulum0.049

Rank 5 · LXL04_030294 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N3-101 aa

PF03171.272OG-FeII_Oxy161-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030294	`PF14226.13`	DIOX_N	3	101	6.7e-19	69.4
LXL04_030294	`PF03171.27`	2OG-FeII_Oxy	161	255	9.6e-32	110.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WPW4`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase 5	69.329%	Swiss-Prot	strong database homology

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