LXL04_028055 | RubberDandelionOmics

Gene overview

LXL04_028055

Reference: OH-1004 Chr: Chr06 Coordinates: 29894667-29897294 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · LXL04_028055|LXL04_028055|OH1004|cDNA

ATGGAGACACTCAAGAGTGATTTAGATCAAACCGAAAGAAAAGACACATACAAATTAGCCTACATGATTCATTTTTTACTTGGTGCAGGTAATTTGCTTCCATGGAATGCTTTAATCACAGCCATCGATTATTTCGCCTATCTTTACCCAGAAAAACACATTGGGAAGGTGTTTTCGGTTGCTTATATGAGTTCTTCATTACTAGTTCTCGTTGTCATGATAATTTGGAGTGATTTCAGTAGAAACGTTTCGTTTAGAGT...

CDS

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1185 bp · LXL04_028055|LXL04_028055|OH1004|CDS

ATGGAGACACTCAAGAGTGATTTAGATCAAACCGAAAGAAAAGACACATACAAATTAGCCTACATGATTCATTTTTTACTTGGTGCAGGTAATTTGCTTCCATGGAATGCTTTAATCACAGCCATCGATTATTTCGCCTATCTTTACCCAGAAAAACACATTGGGAAGGTGTTTTCGGTTGCTTATATGAGTTCTTCATTACTAGTTCTCGTTGTCATGATAATTTGGAGTGATTTCAGTAGAAACGTTTCGTTTAGAGT...

Protein

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394 aa · LXL04_028055|LXL04_028055|OH1004|PROTEIN

METLKSDLDQTERKDTYKLAYMIHFLLGAGNLLPWNALITAIDYFAYLYPEKHIGKVFSVAYMSSSLLVLVVMIIWSDFSRNVSFRVRVNFGFTVFVVSLMVSPIIDWGWCSLEKSNVTFYVVVVCVVMCGLADGLIGGSLIGSAGKLPKEYMQAIFAGTASSGILVSLLRIITKASLPHNPQGLRTSAHFYFIVATVILMVCIVCCTLLYKLPCMEHHYKQLQHNHQTSTTKIRDIARTIQWPALGIFIIYTVTLSIFP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028055`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028055

Location Chr06:29894667-29897294 (-)

Description Similar to ETN8: Equilibrative nucleotide transporter 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02630`	May be involved in nucleoside transport.	No verified direct reference in this release
`At1g70330`	Nucleoside transporter involved in adenosine transport and required for nucleotide metabolism which influences growth and pollen germination.	Characterisation of a concentrative type of adenosine transporter from Arabidopsis thaliana (ENT1,At).2001 · DOI: 10.1016/s0014-5793(01)03195-7 Characterization of three novel members of the Arabidopsis thaliana equilibrative nucleoside transporter (ENT) family.2004 · DOI: 10.1042/bj20040389 Equilibrative nucleoside transporter 1 (ENT1) is critical for pollen germination and vegetative growth in Arabidopsis.2011 · DOI: 10.1093/jxb/err183
`At1g61630`	Nucleoside transporter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast).	Characterization of three novel members of the Arabidopsis thaliana equilibrative nucleoside transporter (ENT) family.2004 · DOI: 10.1042/bj20040389
`At3g09990`	May be involved in nucleoside transport.	No verified direct reference in this release
`At4g05130`	Nucleoside transporter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast).	Characterization of three novel members of the Arabidopsis thaliana equilibrative nucleoside transporter (ENT) family.2004 · DOI: 10.1042/bj20040389

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_028055 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015858 nucleoside transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005337 nucleoside transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G02630

ath:AT1G61630

ath:AT1G70330

ath:AT3G09990

ath:AT4G05130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.464

Rank 1 · LXL04_028055 · OH-1004

Lysosome / Vacuole0.227

Rank 2 · LXL04_028055 · OH-1004

Cytoplasm0.160

Rank 3 · LXL04_028055 · OH-1004

Endoplasmic reticulum0.124

Rank 4 · LXL04_028055 · OH-1004

Golgi apparatus0.085

Rank 5 · LXL04_028055 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01733.25Nucleoside_tran126-225 aa

PF01733.25Nucleoside_tran229-392 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028055	`PF01733.25`	Nucleoside_tran	126	225	3.3e-59	201.5
LXL04_028055	`PF01733.25`	Nucleoside_tran	229	392	3.3e-59	201.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84XI3`	Arabidopsis thaliana	Equilibrative nucleotide transporter 8	61.026%	Swiss-Prot	strong database homology
`Q8VXY7`	Arabidopsis thaliana	Equilibrative nucleotide transporter 1	46.599%	Swiss-Prot	moderate database homology
`Q944P0`	Arabidopsis thaliana	Equilibrative nucleotide transporter 7	31.010%	Swiss-Prot	moderate database homology
`Q9SR64`	Arabidopsis thaliana	Equilibrative nucleotide transporter 2	26.807%	Swiss-Prot	weak database homology
`Q9M0Y2`	Arabidopsis thaliana	Equilibrative nucleotide transporter 4	28.321%	Swiss-Prot	weak database homology

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