LXL04_027329 | RubberDandelionOmics

Gene overview

LXL04_027329

Reference: OH-1004 Chr: Chr06 Coordinates: 13717573-13722575 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1122 bp · LXL04_027329|LXL04_027329|OH1004|cDNA

ATGGACCTTGGTTACCAAACGAGATGCCTTTTGTTGGCTGGTGCCATCTTTCTTCTACAATTACTTGTTGTAACATTAGCTAAAACACAAGTACCTTTGCCATCATCTTATAATACCAGTAGTAGTACTACTACTACATTAAGGGGGAGAGAGTTATTGGGGTGTGATTTGTTCAGAGGAAAATGGGTTGTTGATAATTCATACCCACTCTATGCAGCTTCAAGTTGTCCCTATATTGACTCTGGATACGATTGTCTTAA...

CDS

Download CDS FASTA

1122 bp · LXL04_027329|LXL04_027329|OH1004|CDS

ATGGACCTTGGTTACCAAACGAGATGCCTTTTGTTGGCTGGTGCCATCTTTCTTCTACAATTACTTGTTGTAACATTAGCTAAAACACAAGTACCTTTGCCATCATCTTATAATACCAGTAGTAGTACTACTACTACATTAAGGGGGAGAGAGTTATTGGGGTGTGATTTGTTCAGAGGAAAATGGGTTGTTGATAATTCATACCCACTCTATGCAGCTTCAAGTTGTCCCTATATTGACTCTGGATACGATTGTCTTAA...

Protein

Download Protein FASTA

373 aa · LXL04_027329|LXL04_027329|OH1004|PROTEIN

MDLGYQTRCLLLAGAIFLLQLLVVTLAKTQVPLPSSYNTSSSTTTTLRGRELLGCDLFRGKWVVDNSYPLYAASSCPYIDSGYDCLKHGRSDTQYLKYAWKPDSCNLPRFNGLDLLRKWKGKKVMFVGDSLSENMWQSMACLLHASVPKSRTTFLHKDPLTSLTFQDYGVTIYLYHSTYLVDIVKESIGRVLKLDSIQGGDAWKGMDVLVFNSWHWWTHTGRLQPWDYVQSGSTISKDMNRLDAYYKGMSTWGRWVDLNV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027329`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027329

Location Chr06:13717573-13722575 (-)

Description Similar to TBL38: Protein trichome birefringence-like 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g31110`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g42570`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g14850`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027329 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G31110

ath:AT2G34070

ath:AT2G42570

ath:AT3G14850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.510

Rank 1 · LXL04_027329 · OH-1004

Extracellular0.127

Rank 2 · LXL04_027329 · OH-1004

Cell membrane0.094

Rank 3 · LXL04_027329 · OH-1004

Endoplasmic reticulum0.063

Rank 4 · LXL04_027329 · OH-1004

Cytoplasm0.031

Rank 5 · LXL04_027329 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N54-106 aa

PF13839.13PC-Esterase107-370 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027329	`PF14416.12`	PMR5N	54	106	4.7e-22	78.8
LXL04_027329	`PF13839.13`	PC-Esterase	107	370	1.5e-89	301.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VY22`	Arabidopsis thaliana	Protein trichome birefringence-like 38	64.897%	Swiss-Prot	strong database homology
`O22960`	Arabidopsis thaliana	Protein trichome birefringence-like 37	59.444%	Swiss-Prot	strong database homology
`Q67XC4`	Arabidopsis thaliana	Protein trichome birefringence-like 40	61.875%	Swiss-Prot	strong database homology
`Q9SIN2`	Arabidopsis thaliana	Protein trichome birefringence-like 39	58.892%	Swiss-Prot	strong database homology
`F4IWA8`	Arabidopsis thaliana	Protein trichome birefringence-like 41	54.630%	Swiss-Prot	strong database homology

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