LXL04_027237 | RubberDandelionOmics

Gene overview

LXL04_027237

Reference: OH-1004 Chr: Chr06 Coordinates: 11514871-11518496 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2277 bp · LXL04_027237|LXL04_027237|OH1004|cDNA

ATGAGGTTTCCATTAGGAGCAGTGATCGGAAGATACCCTTTTCCTTCTTCAAGCAATGGCGGGCAAGATCAAAATCTCGAAACTGGTGACGTCATCAGGCACGATAGAAAATGCAGAGACATCCCATTTCTCGTCTTCTTCATTGCATTTTGGATTGCTTTGATTGTTAACTCCAGTTTTGGGTTCCATAAAGGTAACCCCTTAAGGCTCATTCATGGTTTGGACTACAAAGGGAATGTATGCGGTGACAAAAACGCAAA...

CDS

Download CDS FASTA

2277 bp · LXL04_027237|LXL04_027237|OH1004|CDS

ATGAGGTTTCCATTAGGAGCAGTGATCGGAAGATACCCTTTTCCTTCTTCAAGCAATGGCGGGCAAGATCAAAATCTCGAAACTGGTGACGTCATCAGGCACGATAGAAAATGCAGAGACATCCCATTTCTCGTCTTCTTCATTGCATTTTGGATTGCTTTGATTGTTAACTCCAGTTTTGGGTTCCATAAAGGTAACCCCTTAAGGCTCATTCATGGTTTGGACTACAAAGGGAATGTATGCGGTGACAAAAACGCAAA...

Protein

Download Protein FASTA

758 aa · LXL04_027237|LXL04_027237|OH1004|PROTEIN

MRFPLGAVIGRYPFPSSSNGGQDQNLETGDVIRHDRKCRDIPFLVFFIAFWIALIVNSSFGFHKGNPLRLIHGLDYKGNVCGDKNANPNLHGLGVQYWVNPNQVFESGFKDTHSDLEDFKSICLKDCPIPSNDTLKWVCNYPEGDEIRLSMEQWVSRNYDYFSFLTPDMRKSSLQLLGPCYPVLFPTVNVLWSCEFMKRKSNVSLQQWHMMGGQIVDDGMMLDKTVHKSINSQSSVLKRYVADIGKSWPVLIVCGGIIPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027237`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027237

Location Chr06:11514871-11518496 (-)

Description Similar to CHER1: Choline transporter protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15380`	Regulator of vesicle trafficking, including endocytosis.	CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication.2014 · DOI: 10.1038/ncomms5276 Choline transporter-like1 (CHER1) is crucial for plasmodesmata maturation in Arabidopsis thaliana.2017 · DOI: 10.1111/tpj.13393

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027237 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006897 endocytosis Biological Process

GO:0009663 plasmodesma organization Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010067 procambium histogenesis Biological Process

GO:0010088 phloem development Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0015031 protein transport Biological Process

GO:0015871 choline transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0030100 regulation of endocytosis Biological Process

GO:0034229 ethanolamine transport Biological Process

GO:0048364 root development Biological Process

KEGG gene cross-reference

ath:AT3G15380

xla:432216

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.377

Rank 1 · LXL04_027237 · OH-1004

Cell membrane0.338

Rank 2 · LXL04_027237 · OH-1004

Cytoplasm0.206

Rank 3 · LXL04_027237 · OH-1004

Endoplasmic reticulum0.162

Rank 4 · LXL04_027237 · OH-1004

Golgi apparatus0.126

Rank 5 · LXL04_027237 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04515.19Choline_transpo413-730 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027237	`PF04515.19`	Choline_transpo	413	730	2.5e-73	247.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AN2`	Arabidopsis thaliana	Choline transporter protein 1	62.654%	Swiss-Prot	weak database homology

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