LXL04_026956 | RubberDandelionOmics

Gene overview

LXL04_026956

Reference: OH-1004 Chr: Chr06 Coordinates: 5863825-5865857 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1434 bp · LXL04_026956|LXL04_026956|OH1004|cDNA

ATGAAGAAATCCAAACAAGCAAACACACCAGAACTCGAAGATGAGGCTGATAAGATCAGTAACATGCCGGATCATGTTCTTCAACTGATTCTCTCAAATATTCCAAGTACCGAAGAAGTAATCCGAACCAGCATTTTATCAACACGATGGAGATATTTATGGACTTCAATTCCATTCATAGACATAGACTACACCCGAGGTCTAAACCCCCTTACACAATTCAATAGTAACGGATTCAGAGAGTTTGTGTACTGGGTTTT...

CDS

Download CDS FASTA

1434 bp · LXL04_026956|LXL04_026956|OH1004|CDS

ATGAAGAAATCCAAACAAGCAAACACACCAGAACTCGAAGATGAGGCTGATAAGATCAGTAACATGCCGGATCATGTTCTTCAACTGATTCTCTCAAATATTCCAAGTACCGAAGAAGTAATCCGAACCAGCATTTTATCAACACGATGGAGATATTTATGGACTTCAATTCCATTCATAGACATAGACTACACCCGAGGTCTAAACCCCCTTACACAATTCAATAGTAACGGATTCAGAGAGTTTGTGTACTGGGTTTT...

Protein

Download Protein FASTA

477 aa · LXL04_026956|LXL04_026956|OH1004|PROTEIN

MKKSKQANTPELEDEADKISNMPDHVLQLILSNIPSTEEVIRTSILSTRWRYLWTSIPFIDIDYTRGLNPLTQFNSNGFREFVYWVLLNKPLNLDSFHLRCEYYYNMVTLRQWIHTAVMRKVKLLDLTFCPKEESEDVQIPHSLVTCDSLEVLKLCLLGSRLCVPNVTGFQALRVLELKEVYLFIDNLVGYFLESCPLLEDLSLIDCRAGEYVISCSNLKKLRIHTEKLASVDDDEDDHFDSGDCLDLEICCPKLEFLKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026956`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026956

Location Chr06:5863825-5865857 (+)

Description Similar to At1g78760: Putative F-box/FBD/LRR-repeat protein At1g78760

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78760`	Putative F-box/FBD/LRR-repeat protein At1g78760.	No verified direct reference in this release
`At1g66290`	Putative F-box/FBD/LRR-repeat protein At1g66290.	No verified direct reference in this release
`At1g69630`	F-box/LRR-repeat protein 13.	No verified direct reference in this release
`At1g78750`	F-box/FBD/LRR-repeat protein At1g78750.	No verified direct reference in this release
`At1g66310`	FBD-associated F-box protein At1g66310.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026956 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G66290

ath:AT1G66310

ath:AT1G69630

ath:AT1G78750

ath:AT1G78760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.779

Rank 1 · LXL04_026956 · OH-1004

Cytoplasm0.315

Rank 2 · LXL04_026956 · OH-1004

Cell membrane0.042

Rank 3 · LXL04_026956 · OH-1004

Endoplasmic reticulum0.042

Rank 4 · LXL04_026956 · OH-1004

Plastid0.018

Rank 5 · LXL04_026956 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box19-59 aa

PF23622.2LRR_At1g61320_AtMIF192-423 aa

PF24758.2LRR_At5g56370110-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026956	`PF00646.39`	F-box	19	59	5.7e-07	29.9
LXL04_026956	`PF23622.2`	LRR_At1g61320_AtMIF1	92	423	2.4e-14	54.2
LXL04_026956	`PF24758.2`	LRR_At5g56370	110	359	2.6e-12	47.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZV94`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At1g78760	30.748%	Swiss-Prot	moderate database homology
`Q9C8Y8`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At1g66290	27.542%	Swiss-Prot	weak database homology
`Q9FWZ1`	Arabidopsis thaliana	F-box/LRR-repeat protein 13	27.356%	Swiss-Prot	weak database homology
`Q9ZV93`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g78750	27.195%	Swiss-Prot	weak database homology
`Q9C8Y6`	Arabidopsis thaliana	FBD-associated F-box protein At1g66310	27.765%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card