Gene Card
Gene overview
cDNA / CDS / Protein Sequences
852 bp · LXL04_026102|LXL04_026102|OH1004|cDNA
TAGCCATTGATGCAGGTTAAAACTGTCAAAGTTAGCAATCTCTCACTAGGTGCATCTGAGCGAGATGTAAGGGAGTTCTTTTCCTTTTCTGGAGACATCGTATATGTCGAGACAAAAGGTCACAACGAACGCTCCCAAATCGCATACGTCACCTTCACAGATTCTCAAGGAGCAGAAACCGCCGTTCTTCTTTCTGGTGCAACAATAGTTGATACAACAGTCACTGTAACTCTAGACCCCGAATACCAGCTTCCACCTGC...
846 bp · LXL04_026102|LXL04_026102|OH1004|CDS
TTGATGCAGGTTAAAACTGTCAAAGTTAGCAATCTCTCACTAGGTGCATCTGAGCGAGATGTAAGGGAGTTCTTTTCCTTTTCTGGAGACATCGTATATGTCGAGACAAAAGGTCACAACGAACGCTCCCAAATCGCATACGTCACCTTCACAGATTCTCAAGGAGCAGAAACCGCCGTTCTTCTTTCTGGTGCAACAATAGTTGATACAACAGTCACTGTAACTCTAGACCCCGAATACCAGCTTCCACCTGCTGCATC...
Protein
Download Protein FASTA281 aa · LXL04_026102|LXL04_026102|OH1004|PROTEIN
MMQVKTVKVSNLSLGASERDVREFFSFSGDIVYVETKGHNERSQIAYVTFTDSQGAETAVLLSGATIVDTTVTVTLDPEYQLPPAASAPPFGSSSPVKNDSALRKAEDVVTSMFAKGFVLGKDAVTKAKTFDEKHGLTSTASAKVASIDKKIGFTEKVNVGTSIVSDKVKEVDQKLQVSEKAKSAFTAAENTVTNAGSAIMKNRYVFTSAAWVTGAFNKVAKAAGEVGQQTKEKVEKAEDEKRKKMVDDYAEVHLSESPT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026102 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026102 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:120914417-120915523 (+) | ||||||
| Description | Similar to BPA1: Binding partner of ACD11 1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0034051 negative regulation of plant-type hypersensitive response Biological Process GO:0050832 defense response to fungus Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009536 plastid Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0003723 RNA binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT5G16840 spo:2543009 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_18-71 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026102 | PF00076.29 | RRM_1 | 8 | 71 | 2.2e-07 | 31.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9LFD5 | Arabidopsis thaliana | Binding partner of ACD11 1 | 55.985% | Swiss-Prot | strong database homology |