LXL04_024305 | RubberDandelionOmics

Gene overview

LXL04_024305

Reference: OH-1004 Chr: Chr05 Coordinates: 86997022-86999629 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1752 bp · LXL04_024305|LXL04_024305|OH1004|cDNA

ATGCATTTGCGGCATAGAGcattttcttctccttctccttctccttctccCTCCTCCGCCGATGATAACTATATTAACAATAGGACTAGTGGTGGTCCTATGTCCGATGCCGTTTCCGTGTACTCCACTGTATCTCATCATCGTCGCTGTGTTACTAGCTTAAATAGTTACCAGCACCTCACCGACGACGACGACGTTGTCCAGACTCCTTCCCGCTTCATCTCCACGCCTCAGGCTTTGCCTCTTCCTGAATTTTCAGT...

CDS

Download CDS FASTA

1752 bp · LXL04_024305|LXL04_024305|OH1004|CDS

ATGCATTTGCGGCATAGAGCATTTTCTTCTCCTTCTCCTTCTCCTTCTCCCTCCTCCGCCGATGATAACTATATTAACAATAGGACTAGTGGTGGTCCTATGTCCGATGCCGTTTCCGTGTACTCCACTGTATCTCATCATCGTCGCTGTGTTACTAGCTTAAATAGTTACCAGCACCTCACCGACGACGACGACGTTGTCCAGACTCCTTCCCGCTTCATCTCCACGCCTCAGGCTTTGCCTCTTCCTGAATTTTCAGT...

Protein

Download Protein FASTA

583 aa · LXL04_024305|LXL04_024305|OH1004|PROTEIN

MHLRHRAFSSPSPSPSPSSADDNYINNRTSGGPMSDAVSVYSTVSHHRRCVTSLNSYQHLTDDDDVVQTPSRFISTPQALPLPEFSVLLKRDFLRESAANQTSKHVLPSPEEATKRGVSDANRSDLKEPPRKAGLDRSRDAEHRESQFLQNWPQGSNFTAMLRDGNKHRKTVSAPTTPISSRTVFSPTSKTDMPGIQVWSELPSPVYTPQIRTITKSPMTSSFPLHKKSSIESPMSRLGSNAQVPLASVHPLPLPPGTPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024305`
TK1151 ID	TkA03G088950
OH-1004 ID	LXL04_024305
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	36.300
Protein coverage (%)	TK1151 80.420 / OH-1004 54.717 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024305

Location Chr05:86997022-86999629 (+)

Description Similar to MAPKKK5: Mitogen-activated protein kinase kinase kinase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66850`	Mitogen-activated protein kinase (MAPK) involved in the transduction of signal between the host cell surface chitin receptor complex CERK1-LYK5 and the intracellular MAPK cascade that leads to chitin-induced immunity.	The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.2016 · DOI: 10.15252/embj.201694248
`At1g63700`	Functions in a MAP kinase cascade that acts as a molecular switch to regulate the first cell fate decisions in the zygote and the early embryo.	No verified direct reference in this release
`At1g53570`	Mitogen-activated protein kinase kinase kinase 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024305 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000165 MAPK cascade Biological Process

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0010098 suspensor development Biological Process

GO:0010103 stomatal complex morphogenesis Biological Process

GO:0010229 inflorescence development Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900424 regulation of defense response to bacterium Biological Process

GO:1900745 positive regulation of p38MAPK cascade Biological Process

KEGG gene cross-reference

ath:AT1G53570

ath:AT1G63700

ath:AT5G66850

hsa:4215

mmu:26406

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.571

Rank 1 · LXL04_024305 · OH-1004

Nucleus0.299

Rank 2 · LXL04_024305 · OH-1004

Cell membrane0.259

Rank 3 · LXL04_024305 · OH-1004

Golgi apparatus0.048

Rank 4 · LXL04_024305 · OH-1004

Endoplasmic reticulum0.037

Rank 5 · LXL04_024305 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase279-538 aa

PF07714.24PK_Tyr_Ser-Thr281-533 aa

PF03109.23ABC1319-433 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024305	`PF00069.32`	Pkinase	279	538	8e-66	222.8
LXL04_024305	`PF07714.24`	PK_Tyr_Ser-Thr	281	533	1.2e-43	150.0
LXL04_024305	`PF03109.23`	ABC1	319	433	2.5e-06	27.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H5`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 5	62.619%	Swiss-Prot	moderate database homology
`Q9CAD5`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase YODA	52.210%	Swiss-Prot	moderate database homology
`F4HRJ4`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 3	55.882%	Swiss-Prot	weak database homology

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