LXL04_023055 | RubberDandelionOmics

基因概览

LXL04_023055

当前版本: OH-1004 染色体: Chr05 坐标: 21247846-21252314 链方向: + 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

1848 bp · LXL04_023055|LXL04_023055|OH1004|cDNA

acaaatcGATGGGTAGTAGTTGTACTGAGAAAACGATTGTCTGGTTTAGAAGGGATCTGAGGATCGAAGATAATCCAGCTCTAGCTGAAGCCGCAAGAGATGGTGCTGTATTTCCTCTGTTCATATGGTGTCCTAAAGAAGAACAGCAATTTTACCCGGGTCGGGTTTCAAGATGGTGGCTGAAGCAATCGCTGATCCATTTAAGACAATCTTTGAAATCGCTTGGAGCTGATCTTGTTTTGATGAAAGCGAACAGTACT...

CDS

下载 CDS FASTA

1818 bp · LXL04_023055|LXL04_023055|OH1004|CDS

ATGGGTAGTAGTTGTACTGAGAAAACGATTGTCTGGTTTAGAAGGGATCTGAGGATCGAAGATAATCCAGCTCTAGCTGAAGCCGCAAGAGATGGTGCTGTATTTCCTCTGTTCATATGGTGTCCTAAAGAAGAACAGCAATTTTACCCGGGTCGGGTTTCAAGATGGTGGCTGAAGCAATCGCTGATCCATTTAAGACAATCTTTGAAATCGCTTGGAGCTGATCTTGTTTTGATGAAAGCGAACAGTACTACTTCAGC...

蛋白

下载蛋白 FASTA

605 aa · LXL04_023055|LXL04_023055|OH1004|PROTEIN

MGSSCTEKTIVWFRRDLRIEDNPALAEAARDGAVFPLFIWCPKEEQQFYPGRVSRWWLKQSLIHLRQSLKSLGADLVLMKANSTTSALIECITAVGATKLVYNQLYDPISLVRDHSIKQNLGELGVKVQTYNGDMLYEPWEVYDKEGYAFTTFNAYWDKCMKMQTDPSLRLPPCRLVQAPGSVDDCTIEKLGLEDESEKPSNALLGRGWSPGWINAEKALTTFIENHLLDYAKHRLKVTGNSTSILSPYIHFGELSVKKV...

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_023055`
TK1151 ID	TkA06G409120
OH-1004 ID	LXL04_023055
关系 / 置信度	跨参考版本对应关系 / Strict
蛋白一致性 (%)	98.000
蛋白覆盖度 (%)	TK1151 100.000 / OH-1004 100.000 覆盖度与证据说明覆盖度为最高分比对片段的序列跨度占代表蛋白长度的比例。同源匹配不等同于功能验证。
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_023055

位置 Chr05:21247846-21252314 (+)

描述 Similar to CRY2: Cryptochrome-2

拟南芥 / 水稻参考基因与文献

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拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At1g04400`	光感受器主要介导下胚轴伸长的蓝光抑制和花起始的光周期控制，并调节其他光反应，包括昼夜节律、热带生长、气孔开放、保卫细胞发育、根部发育、细菌和病毒病原体反应、非生物应激反应、细胞周期、程序性细胞死亡、顶端优势、果实和胚珠发育、种子休眠和磁感受。	The role of cryptochrome 2 in flowering in Arabidopsis.2003 · DOI: 10.1104/pp.103.029819 Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana.2006 · DOI: 10.1007/s00425-006-0280-6 CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048157 Double loss-of-function mutation in EARLY FLOWERING 3 and CRYPTOCHROME 2 genes delays flowering under continuous light but accelerates it under long days and short days: an important role for Arabidopsis CRY2 to accelerate flowering time in continuous light.2011 · DOI: 10.1093/jxb/erq450 Blue light-dependent interaction of CRY2 with SPA1 regulates COP1 activity and floral initiation in Arabidopsis.2011 · DOI: 10.1016/j.cub.2011.03.048 The Cryptochrome Blue Light Receptors.2010 · DOI: 10.1199/tab.0135 Phototropins but not cryptochromes mediate the blue light-specific promotion of stomatal conductance, while both enhance photosynthesis and transpiration under full sunlight.2012 · DOI: 10.1104/pp.111.187237 Lifetimes of Arabidopsis cryptochrome signaling states in vivo.2013 · DOI: 10.1111/tpj.12144 Strigolactone-regulated hypocotyl elongation is dependent on cryptochrome and phytochrome signaling pathways in Arabidopsis.2014 · DOI: 10.1093/mp/sst093 Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003861 Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways.2014 · DOI: 10.1105/tpc.114.129809 Suppression of Arabidopsis flowering by near-null magnetic field is affected by light.2015 · DOI: 10.1002/bem.21927 Blue-light dependent ROS formation by Arabidopsis cryptochrome-2 may contribute toward its signaling role.2015 · DOI: 10.1080/15592324.2015.1042647 Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2.1998 · DOI: 10.1073/pnas.95.5.2686 Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism.1998 · DOI: 10.1038/33701
`At4g08920`	可能作为蓝光受体，调控下胚轴伸长、开花及其他光响应过程。	Arabidopsis Mutants Lacking Blue Light-Dependent Inhibition of Hypocotyl Elongation.1991 · DOI: 10.1105/tpc.3.7.685 Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana.2006 · DOI: 10.1007/s00425-006-0280-6 CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03508.x CRYPTOCHROME 1 is implicated in promoting R protein-mediated plant resistance to Pseudomonas syringae in Arabidopsis.2010 · DOI: 10.1093/mp/ssp107 Arabidopsis cryptochrome-1 restrains lateral roots growth by inhibiting auxin transport.2010 · DOI: 10.1016/j.jplph.2009.12.003 Light receptor action is critical for maintaining plant biomass at warm ambient temperatures.2011 · DOI: 10.1111/j.1365-313x.2010.04434.x Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades.2011 · DOI: 10.1111/j.1365-313x.2011.04598.x Light-activated cryptochrome reacts with molecular oxygen to form a flavin-superoxide radical pair consistent with magnetoreception.2011 · DOI: 10.1074/jbc.m111.228940 Arabidopsis cryptochrome 1 interacts with SPA1 to suppress COP1 activity in response to blue light.2011 · DOI: 10.1101/gad.2025011 The Cryptochrome Blue Light Receptors.2010 · DOI: 10.1199/tab.0135 Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome.2011 · DOI: 10.1016/j.jmb.2011.08.031 Phototropins but not cryptochromes mediate the blue light-specific promotion of stomatal conductance, while both enhance photosynthesis and transpiration under full sunlight.2012 · DOI: 10.1104/pp.111.187237 The shoot regeneration capacity of excised Arabidopsis cotyledons is established during the initial hours after injury and is modulated by a complex genetic network of light signalling.2013 · DOI: 10.1111/j.1365-3040.2012.02554.x The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis.2012 · DOI: 10.1105/tpc.112.100099 cry1 and GPA1 signaling genetically interact in hook opening and anthocyanin synthesis in Arabidopsis.2012 · DOI: 10.1007/s11103-012-9950-x Lifetimes of Arabidopsis cryptochrome signaling states in vivo.2013 · DOI: 10.1111/tpj.12144 Strigolactone-regulated hypocotyl elongation is dependent on cryptochrome and phytochrome signaling pathways in Arabidopsis.2014 · DOI: 10.1093/mp/sst093 Blue-light dependent reactive oxygen species formation by Arabidopsis cryptochrome may define a novel evolutionarily conserved signaling mechanism.2015 · DOI: 10.1111/nph.13341 Suppression of Arabidopsis flowering by near-null magnetic field is affected by light.2015 · DOI: 10.1002/bem.21927 Cellular metabolites modulate in vivo signaling of Arabidopsis cryptochrome-1.2015 · DOI: 10.1080/15592324.2015.1063758 Mutations throughout an Arabidopsis blue-light photoreceptor impair blue-light-responsive anthocyanin accumulation and inhibition of hypocotyl elongation.1995 · DOI: 10.1046/j.1365-313x.1995.08050653.x Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism.1998 · DOI: 10.1038/33701 Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development.1998 · DOI: 10.1104/pp.118.1.27

水稻

当前来源表未检出该物种的同源命中。

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_023055 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0000719 photoreactive repair 生物过程

GO:0006281 DNA repair 生物过程

GO:0006325 chromatin organization 生物过程

GO:0006338 chromatin remodeling 生物过程

GO:0006952 defense response 生物过程

GO:0007623 circadian rhythm 生物过程

GO:0009266 response to temperature stimulus 生物过程

GO:0009414 response to water deprivation 生物过程

GO:0009416 response to light stimulus 生物过程

GO:0009583 detection of light stimulus 生物过程

GO:0009637 response to blue light 生物过程

GO:0009638 phototropism 生物过程

KEGG 基因交叉引用

ath:AT1G04400

ath:AT4G08920

atu:Atu1218

syn:slr0854

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

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基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

查看该基因的表达量

数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞核0.463

排名 1 · LXL04_023055 · OH-1004

细胞质0.423

排名 2 · LXL04_023055 · OH-1004

细胞膜0.090

排名 3 · LXL04_023055 · OH-1004

线粒体0.070

排名 4 · LXL04_023055 · OH-1004

内质网0.037

排名 5 · LXL04_023055 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF00875.25DNA_photolyase9-165 aa

PF03441.20FAD_binding_7286-482 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_023055	`PF00875.25`	DNA_photolyase	9	165	2.5e-39	135.6
LXL04_023055	`PF03441.20`	FAD_binding_7	286	482	8.7e-71	238.2

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

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蛋白	物种	描述	一致性	数据库	置信等级
`Q96524`	拟南芥	Cryptochrome-2	62.842%	Swiss-Prot	强数据库同源证据
`Q43125`	拟南芥	Cryptochrome-1	57.274%	Swiss-Prot	强数据库同源证据

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