LXL04_022237 | RubberDandelionOmics

Gene overview

LXL04_022237

Reference: OH-1004 Chr: Chr04 Coordinates: 146649520-146664181 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5049 bp · LXL04_022237|LXL04_022237|OH1004|cDNA

ATGGATGTAAATAAACATCAAGTTGGAACGTTAATTTACGAAAGAACGAGATGGAACAAAGGATCGAAGAGACTGAATGAAGACTCGAATAAATTATTCAAAAAACTACCAAAACCAACCATGACGGTGATATTAACGGTGAGATTCTCGGGTCCAATATTCTGTATTATGTCTAGGTCCGATATCTGGGATTCCATTAAGATCCCACTGATATTAACCGTGGGAGATGATGAGGAGCAGAAAAATTCATCCgtatcatc...

CDS

Download CDS FASTA

5049 bp · LXL04_022237|LXL04_022237|OH1004|CDS

ATGGATGTAAATAAACATCAAGTTGGAACGTTAATTTACGAAAGAACGAGATGGAACAAAGGATCGAAGAGACTGAATGAAGACTCGAATAAATTATTCAAAAAACTACCAAAACCAACCATGACGGTGATATTAACGGTGAGATTCTCGGGTCCAATATTCTGTATTATGTCTAGGTCCGATATCTGGGATTCCATTAAGATCCCACTGATATTAACCGTGGGAGATGATGAGGAGCAGAAAAATTCATCCGTATCATC...

Protein

Download Protein FASTA

1682 aa · LXL04_022237|LXL04_022237|OH1004|PROTEIN

MDVNKHQVGTLIYERTRWNKGSKRLNEDSNKLFKKLPKPTMTVILTVRFSGPIFCIMSRSDIWDSIKIPLILTVGDDEEQKNSSVSSSSSSGQRLRPKEHEGKRKDSSTSVSIDKQCRPFSLAEIKLATHDFDDALVIGKGGFGNVYKGNVDFGKGTDVAIKRLKLDSDQGATEFRAEIEMLSKFRHSHIVSLLGYHEASDNREMILVYEYMPNGSLEDHLHKRRTKGTNSHLLTWVQRLHICVGAARGLDYLHTGTGVQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022237`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022237

Location Chr04:146649520-146664181 (-)

Description Similar to PIX13: Probable serine/threonine-protein kinase PIX13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17220`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g07570`	Possible bi-functional kinase.	Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At4g35600`	Acts as a spatial inhibitor of signaling that modulates abscission zone cell adhesion and expansion.	No verified direct reference in this release
`At2g28930`	Possible bi-functional kinase.	Light-induced stomatal opening is affected by the guard cell protein kinase APK1b.2014 · DOI: 10.1371/journal.pone.0097161

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022237 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004713 protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07570

ath:AT2G17220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.603

Rank 1 · LXL04_022237 · OH-1004

Cytoplasm0.279

Rank 2 · LXL04_022237 · OH-1004

Nucleus0.194

Rank 3 · LXL04_022237 · OH-1004

Endoplasmic reticulum0.055

Rank 4 · LXL04_022237 · OH-1004

Golgi apparatus0.034

Rank 5 · LXL04_022237 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr137-416 aa

PF00069.32Pkinase137-413 aa

PF07714.24PK_Tyr_Ser-Thr618-893 aa

PF00069.32Pkinase642-894 aa

PF00069.32Pkinase1012-1288 aa

PF07714.24PK_Tyr_Ser-Thr1013-1290 aa

PF00069.32Pkinase1388-1664 aa

PF07714.24PK_Tyr_Ser-Thr1391-1667 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022237	`PF07714.24`	PK_Tyr_Ser-Thr	137	416	1.8e-171	568.9
LXL04_022237	`PF00069.32`	Pkinase	137	413	8e-164	544.1
LXL04_022237	`PF07714.24`	PK_Tyr_Ser-Thr	618	893	1.8e-171	568.9
LXL04_022237	`PF00069.32`	Pkinase	642	894	8e-164	544.1
LXL04_022237	`PF00069.32`	Pkinase	1012	1288	8e-164	544.1
LXL04_022237	`PF07714.24`	PK_Tyr_Ser-Thr	1013	1290	1.8e-171	568.9
LXL04_022237	`PF00069.32`	Pkinase	1388	1664	8e-164	544.1
LXL04_022237	`PF07714.24`	PK_Tyr_Ser-Thr	1391	1667	1.8e-171	568.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SII6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PIX13	61.238%	Swiss-Prot	weak database homology
`Q06548`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL9	54.438%	Swiss-Prot	weak database homology
`O49840`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL3	54.518%	Swiss-Prot	weak database homology
`P27450`	Arabidopsis thaliana	Probable serine/threonine-protein kinase CST	51.852%	Swiss-Prot	weak database homology
`P46573`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL10	55.911%	Swiss-Prot	weak database homology

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