LXL04_018078 | RubberDandelionOmics

Gene overview

LXL04_018078

Reference: OH-1004 Chr: Chr04 Coordinates: 6214211-6215727 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

801 bp · LXL04_018078|LXL04_018078|OH1004|cDNA

ATGGCGGTTCTAACATTGCCACACTGTTTTCCATTACAATCGGTCAACGGCCGACGTAATAGTCATCGAAAACGGTGTAATAATAGCGGCGGTCTACGGTGGTCCACGGTTGCCTCACAGCAGCAAGAGCTGTGCTCGGAAGTTGAGAGAATAAGGATCGATAAATCTGCTTTGAAGATAGAGGAAGCATGCTCAGATGCGGAGCTTTGGGCCACGTCTCGTCTTCGAGTGAGATCTTTCTATGATTTCAAGTCAACTTT...

CDS

Download CDS FASTA

801 bp · LXL04_018078|LXL04_018078|OH1004|CDS

ATGGCGGTTCTAACATTGCCACACTGTTTTCCATTACAATCGGTCAACGGCCGACGTAATAGTCATCGAAAACGGTGTAATAATAGCGGCGGTCTACGGTGGTCCACGGTTGCCTCACAGCAGCAAGAGCTGTGCTCGGAAGTTGAGAGAATAAGGATCGATAAATCTGCTTTGAAGATAGAGGAAGCATGCTCAGATGCGGAGCTTTGGGCCACGTCTCGTCTTCGAGTGAGATCTTTCTATGATTTCAAGTCAACTTT...

Protein

Download Protein FASTA

266 aa · LXL04_018078|LXL04_018078|OH1004|PROTEIN

MAVLTLPHCFPLQSVNGRRNSHRKRCNNSGGLRWSTVASQQQELCSEVERIRIDKSALKIEEACSDAELWATSRLRVRSFYDFKSTFGIEDHKKYLAEREFEALKDRLSGTKEGEKVSCINATLLSSQTSFPEELCSSCKFSDNGEDRIVIGSLDVNQCMSLPNEITGMKPKEIGGGFARAYLSNVCVAKECQRNGIAFLLVEKSKLVAKNLGISDLYVHVAVDNEAAKNLYMKCGFVYESEEPAWQARFLDRPRRLLLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018078`
TK1151 ID	TkA08G028850
OH-1004 ID	LXL04_018078
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018078

Location Chr04:6214211-6215727 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28030`	Protein acetyltransferase with dual specificity triggering both N-alpha-acetylation (NTA), with a large spectrum of modified N-termini, including methionine, alanine, serine, threonine and to a lower extent valine and proline as substrates, and epsilon-lysine acetylation (KA).	No verified direct reference in this release
`At2g06025`	Protein acetyltransferase with dual specificity triggering both N-alpha-acetylation (NTA), with a large spectrum of modified N-termini, including methionine, alanine, serine, threonine and to a lower extent valine as substrates, and epsilon-lysine acetylation (KA).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018078 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006474 N-terminal protein amino acid acetylation Biological Process

GO:0018394 peptidyl-lysine acetylation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0004596 protein-N-terminal amino-acid acetyltransferase activity Molecular Function

GO:0008080 N-acetyltransferase activity Molecular Function

GO:0061733 protein-lysine-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G06025

ath:AT4G28030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975

Rank 1 · LXL04_018078 · OH-1004

Nucleus0.031

Rank 2 · LXL04_018078 · OH-1004

Mitochondrion0.029

Rank 3 · LXL04_018078 · OH-1004

Cytoplasm0.024

Rank 4 · LXL04_018078 · OH-1004

Peroxisome0.015

Rank 5 · LXL04_018078 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00583.32Acetyltransf_1177-237 aa

PF13508.14Acetyltransf_7180-238 aa

PF13673.14Acetyltransf_10180-242 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018078	`PF00583.32`	Acetyltransf_1	177	237	8e-11	43.0
LXL04_018078	`PF13508.14`	Acetyltransf_7	180	238	1.8e-07	32.2
LXL04_018078	`PF13673.14`	Acetyltransf_10	180	242	3.6e-06	27.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AC8`	Arabidopsis thaliana	GCN5-related N-acetyltransferase 7, chloroplastic	59.494%	Swiss-Prot	strong database homology
`Q8GUT5`	Arabidopsis thaliana	GCN5-related N-acetyltransferase 6, chloroplastic	30.093%	Swiss-Prot	moderate database homology

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