LXL04_015169 | RubberDandelionOmics

Gene overview

LXL04_015169

Reference: OH-1004 Chr: Chr03 Coordinates: 65248924-65250126 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1203 bp · LXL04_015169|LXL04_015169|OH1004|cDNA

ATGTCGATATCGGTGGATTGGTCGGAATTGCAGCCGGAATTGATCGAATCAATTGCGAGAAAACTCAACGTTCACAAGGATTACGTACGTTTCAGAGCAGTTTGCTCGAATTGGCGAAAATCAACTTCTAAAACCCCAAAACATCTCCCATGTCAACTCCCATGGCTGATGCTTCCTCAAACCAATAATCAGAATCGTCAATCTCATCTCCGAGCGTTTTTCAGCCTTTCCGATAACAAAATCTACCGCCTGAGTCTTCC...

CDS

Download CDS FASTA

1203 bp · LXL04_015169|LXL04_015169|OH1004|CDS

ATGTCGATATCGGTGGATTGGTCGGAATTGCAGCCGGAATTGATCGAATCAATTGCGAGAAAACTCAACGTTCACAAGGATTACGTACGTTTCAGAGCAGTTTGCTCGAATTGGCGAAAATCAACTTCTAAAACCCCAAAACATCTCCCATGTCAACTCCCATGGCTGATGCTTCCTCAAACCAATAATCAGAATCGTCAATCTCATCTCCGAGCGTTTTTCAGCCTTTCCGATAACAAAATCTACCGCCTGAGTCTTCC...

Protein

Download Protein FASTA

400 aa · LXL04_015169|LXL04_015169|OH1004|PROTEIN

MSISVDWSELQPELIESIARKLNVHKDYVRFRAVCSNWRKSTSKTPKHLPCQLPWLMLPQTNNQNRQSHLRAFFSLSDNKIYRLSLPEASNIRRRCGSSHGWLVILEETPAVFLINPLTRVKHHLPPLSSFPNVTKFNFYDVGREYTLKSSEGDIYTCNLKEMRDSFIKKVVFSSSPSDSDSDYFALAILNQTGDLAYCKKDDSSWKFIDNAQSYCEDAVYHKGCFYAVSKYGTIAVCDVSGGLPNVSFIQTPPQVGGDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015169`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015169

Location Chr03:65248924-65250126 (+)

Description Similar to SKIP23: F-box protein SKIP23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17030`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g55150`	Putative F-box protein At5g55150.	No verified direct reference in this release
`At2g17036`	F-box protein At2g17036.	No verified direct reference in this release
`At2g26160`	F-box protein At2g26160.	No verified direct reference in this release
`At1g65770`	Putative F-box protein At1g65770.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015169 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:2000083 negative regulation of L-ascorbic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G65770

ath:AT2G17030

ath:AT2G17036

ath:AT2G26160

ath:AT5G55150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.601

Rank 1 · LXL04_015169 · OH-1004

Nucleus0.493

Rank 2 · LXL04_015169 · OH-1004

Cell membrane0.101

Rank 3 · LXL04_015169 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_015169 · OH-1004

Plastid0.034

Rank 5 · LXL04_015169 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03478.25Beta-prop_KIB1-473-367 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015169	`PF03478.25`	Beta-prop_KIB1-4	73	367	2.3e-69	234.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3EBZ2`	Arabidopsis thaliana	F-box protein SKIP23	30.714%	Swiss-Prot	moderate database homology
`Q9FLP7`	Arabidopsis thaliana	Putative F-box protein At5g55150	27.363%	Swiss-Prot	weak database homology
`Q6DR20`	Arabidopsis thaliana	F-box protein At2g17036	25.472%	Swiss-Prot	weak database homology
`Q1PEZ8`	Arabidopsis thaliana	F-box protein At2g26160	25.915%	Swiss-Prot	weak database homology
`Q9SHX9`	Arabidopsis thaliana	Putative F-box protein At1g65770	26.891%	Swiss-Prot	weak database homology

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