LXL04_014856 | RubberDandelionOmics

Gene overview

LXL04_014856

Reference: OH-1004 Chr: Chr03 Coordinates: 58149895-58160195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3864 bp · LXL04_014856|LXL04_014856|OH1004|cDNA

ATGGGTTCATGGCGGAATTCATCATCTGGGAAGATCTTATTGTTGATTATAATGCCGCTGGTGTTGATTTTGGGGTTTACGGCTTTGAAGAAATCAAACTGGGATATTGCGCTTGGTAATTATTACCCTTGGAGTTCTTCTGTAACCGAAGATGATTCTGCGGCACCGGGACCTGTTTCATCGGAAAACTTTGGTGGGGATTTATTGGACTGGCGGTGGACGGCGGTTAGCGGTGGTGGTAAATTGGCTGATGCTGaagc...

CDS

Download CDS FASTA

3864 bp · LXL04_014856|LXL04_014856|OH1004|CDS

ATGGGTTCATGGCGGAATTCATCATCTGGGAAGATCTTATTGTTGATTATAATGCCGCTGGTGTTGATTTTGGGGTTTACGGCTTTGAAGAAATCAAACTGGGATATTGCGCTTGGTAATTATTACCCTTGGAGTTCTTCTGTAACCGAAGATGATTCTGCGGCACCGGGACCTGTTTCATCGGAAAACTTTGGTGGGGATTTATTGGACTGGCGGTGGACGGCGGTTAGCGGTGGTGGTAAATTGGCTGATGCTGAAGC...

Protein

Download Protein FASTA

1287 aa · LXL04_014856|LXL04_014856|OH1004|PROTEIN

MGSWRNSSSGKILLLIIMPLVLILGFTALKKSNWDIALGNYYPWSSSVTEDDSAAPGPVSSENFGGDLLDWRWTAVSGGGKLADAEAPSSSPTITLEEDMDMQQPPGFNLMGTYRPPFYPSELSEFDLPNANITPINNFRVSRYQYASLNMELKYIVEQVMTMEDNNFATALNSSEVFLPTDDTRVSPTITPVPRNFSGLDKLEASLVQARAAIREARKGNPINDPEYAPYGPIYWNASSFHKSYLEMEKMLKVYVYEEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014856`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014856

Location Chr03:58149895-58160195 (+)

Description Similar to At5g03795: Probable glycosyltransferase At5g03795

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g25310`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g20260`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014856 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G03795

ath:AT5G11130

ath:AT5G20260

ath:AT5G25310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.356

Rank 1 · LXL04_014856 · OH-1004

Endoplasmic reticulum0.221

Rank 2 · LXL04_014856 · OH-1004

Golgi apparatus0.127

Rank 3 · LXL04_014856 · OH-1004

Cell membrane0.105

Rank 4 · LXL04_014856 · OH-1004

Cytoplasm0.097

Rank 5 · LXL04_014856 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016.21Exostosin_GT47249-528 aa

PF13837.13Myb_DNA-bind_41032-1103 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014856	`PF03016.21`	Exostosin_GT47	249	528	2.3e-61	208.4
LXL04_014856	`PF13837.13`	Myb_DNA-bind_4	1032	1103	1.8e-06	29.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN2`	Arabidopsis thaliana	Probable glycosyltransferase At5g03795	63.702%	Swiss-Prot	weak database homology
`Q9SSE8`	Arabidopsis thaliana	Probable glycosyltransferase At3g07620	55.497%	Swiss-Prot	weak database homology
`Q3E7Q9`	Arabidopsis thaliana	Probable glycosyltransferase At5g25310	50.761%	Swiss-Prot	weak database homology
`Q9LFP3`	Arabidopsis thaliana	Probable glycosyltransferase At5g11130	47.396%	Swiss-Prot	weak database homology
`Q3E9A4`	Arabidopsis thaliana	Probable glycosyltransferase At5g20260	51.295%	Swiss-Prot	weak database homology

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