LXL04_014298 | RubberDandelionOmics

Gene overview

LXL04_014298

Reference: OH-1004 Chr: Chr03 Coordinates: 45585583-45588963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2173 bp · LXL04_014298|LXL04_014298|OH1004|cDNA

ATGCCGGTGGCGCGACCAGAATCGTCTGATTCCAGGGTAATTGCTCACGTCGACATGGATTGTTTCTACGTTCAAGGTTTCTTCCTTCACCCCATTTCCTTTCTTTGTCTGTATACGTATACAAGGTCGTTACTTGTTAGGTTTTCGTCAATGGCTTATCACAGTGAAGTGATGTATCAAATTAGTGCTCCATTGATGCTCTATCTTTACTCAAATCCAATTATTAACAAGGAAAAGCGAGGATTTCATTCACTAGATTC...

CDS

Download CDS FASTA

2103 bp · LXL04_014298|LXL04_014298|OH1004|CDS

ATGCCGGTGGCGCGACCAGAATCGTCTGATTCCAGGGTAATTGCTCACGTCGACATGGATTGTTTCTACGTTCAAGGTTTCTTCCTTCACCCCATTTCCTTTCTTTGTCTGTATACGTATACAAGGTCGTTACTTGTTAGGTTTTCGTCAATGGCTTATCACAGTGAAGTGATGTATCAAATTAGTGCTCCATTGATGCTCTATCTTTACTCAAATCCAATTATTAACAAGGAAAAGCGAGGATTTCATTCACTAGATTC...

Protein

Download Protein FASTA

700 aa · LXL04_014298|LXL04_014298|OH1004|PROTEIN

MPVARPESSDSRVIAHVDMDCFYVQGFFLHPISFLCLYTYTRSLLVRFSSMAYHSEVMYQISAPLMLYLYSNPIINKEKRGFHSLDSEIEEPMEQRKQPHLRGQPTAVVQYNSWQGGGLIAVGYEARKDGVKRSMRGDEAKKVCPQIHLVQVPVARGKADLNIYRSAGSEVVSILSRKGRCERASIDEVYLDLTEASEKMLKETPPESLENIHEEVLKSHVLGLIHSENDNKDTVKQWLQQKDGDHRDKLLACGALIVAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014298`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014298

Location Chr03:45585583-45588963 (+)

Description Similar to POLH: DNA polymerase eta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44740`	Error-free DNA polymerase specifically involved in DNA repair.	Analysis of UV-induced mutation spectra in Escherichia coli by DNA polymerase eta from Arabidopsis thaliana.2006 · DOI: 10.1016/j.mrfmmm.2006.05.036 Two translesion synthesis DNA polymerase genes, AtPOLH and AtREV1, are involved in development and UV light resistance in Arabidopsis.2008 · DOI: 10.1016/j.jplph.2007.11.012 Arabidopsis thaliana Y-family DNA polymerase eta catalyses translesion synthesis and interacts functionally with PCNA2.2008 · DOI: 10.1111/j.1365-313x.2008.03562.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014298 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000731 DNA synthesis involved in DNA repair Biological Process

GO:0006281 DNA repair Biological Process

GO:0006282 regulation of DNA repair Biological Process

GO:0006290 pyrimidine dimer repair Biological Process

GO:0006301 DNA damage tolerance Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0009314 response to radiation Biological Process

GO:0009650 UV protection Biological Process

GO:0010224 response to UV-B Biological Process

GO:0010225 response to UV-C Biological Process

GO:0019985 translesion synthesis Biological Process

GO:0042276 error-prone translesion synthesis Biological Process

KEGG gene cross-reference

ath:AT5G44740

dme:Dmel_CG7143

hsa:5429

mmu:80905

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.823

Rank 1 · LXL04_014298 · OH-1004

Cytoplasm0.214

Rank 2 · LXL04_014298 · OH-1004

Mitochondrion0.072

Rank 3 · LXL04_014298 · OH-1004

Cell membrane0.026

Rank 4 · LXL04_014298 · OH-1004

Golgi apparatus0.015

Rank 5 · LXL04_014298 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00817.26IMS93-288 aa

PF21704.4POLH-Rev1_HhH311-366 aa

PF11799.14IMS_C377-500 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014298	`PF00817.26`	IMS	93	288	3.7e-35	121.7
LXL04_014298	`PF21704.4`	POLH-Rev1_HhH	311	366	1e-20	74.4
LXL04_014298	`PF11799.14`	IMS_C	377	500	4.2e-09	37.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H2D5`	Arabidopsis thaliana	DNA polymerase eta	57.798%	Swiss-Prot	strong database homology

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