LXL04_014204 | RubberDandelionOmics

Gene overview

LXL04_014204

Reference: OH-1004 Chr: Chr03 Coordinates: 43631389-43633242 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1677 bp · LXL04_014204|LXL04_014204|OH1004|cDNA

ATGCATCGACGAAAACAAATTTCTAAACCCATTTCAACACCACGAGTCCTTATCTCCATGGCTATAATATCCCTCCTCTTCATTTCTCTTCTCTTTTTCATTAACCCCACCTTCTCCGCCGCCCGACGCCACCGCCACATCCATCCTCCGTCAATAAAAGATAAACCATCATCACCTGATCTGATCCAGCAAGCTTGTAAAGCTACCCGGTACCAACAGCTATGTGAATCTTCACTCCGCCGTTATCCCAACGGAAATGC...

CDS

Download CDS FASTA

1677 bp · LXL04_014204|LXL04_014204|OH1004|CDS

ATGCATCGACGAAAACAAATTTCTAAACCCATTTCAACACCACGAGTCCTTATCTCCATGGCTATAATATCCCTCCTCTTCATTTCTCTTCTCTTTTTCATTAACCCCACCTTCTCCGCCGCCCGACGCCACCGCCACATCCATCCTCCGTCAATAAAAGATAAACCATCATCACCTGATCTGATCCAGCAAGCTTGTAAAGCTACCCGGTACCAACAGCTATGTGAATCTTCACTCCGCCGTTATCCCAACGGAAATGC...

Protein

Download Protein FASTA

558 aa · LXL04_014204|LXL04_014204|OH1004|PROTEIN

MHRRKQISKPISTPRVLISMAIISLLFISLLFFINPTFSAARRHRHIHPPSIKDKPSSPDLIQQACKATRYQQLCESSLRRYPNGNAMEIIQSALSVSSENLHAAQSMAQSILQASAGIIDHTTAAKNCIEHLKNSDYRLKSTVDALPRGKMKDGRAWTSAGMAYQYDCWSALKYVNDTKMINETMSFLNTLIDHTSNALSMMMAYDVYGDQTASWSPPKTERDGFWEGRGSGGQGSQLGVPAGLKADVTVCEEDGECDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014204`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014204

Location Chr03:43631389-43633242 (-)

Description Similar to PME51: Probable pectinesterase/pectinesterase inhibitor 51

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g09760`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g64640`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g49180`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At3g05610`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014204 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0048358 mucilage pectin biosynthetic process Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT3G05610

ath:AT5G09760

ath:AT5G49180

ath:AT5G64640

cit:102577945

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.377

Rank 1 · LXL04_014204 · OH-1004

Cell membrane0.263

Rank 2 · LXL04_014204 · OH-1004

Lysosome / Vacuole0.106

Rank 3 · LXL04_014204 · OH-1004

Endoplasmic reticulum0.097

Rank 4 · LXL04_014204 · OH-1004

Cytoplasm0.094

Rank 5 · LXL04_014204 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043.21PMEI60-202 aa

PF01095.26Pectinesterase249-553 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014204	`PF04043.21`	PMEI	60	202	9.3e-24	85.0
LXL04_014204	`PF01095.26`	Pectinesterase	249	553	9.6e-116	386.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXD9`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 51	65.941%	Swiss-Prot	strong database homology
`Q8L7Q7`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 64	61.811%	Swiss-Prot	strong database homology
`Q9FJ21`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 58	33.972%	Swiss-Prot	moderate database homology
`Q8GX86`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 21	34.513%	Swiss-Prot	moderate database homology

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