LXL04_014198 | RubberDandelionOmics

Gene overview

LXL04_014198

Reference: OH-1004 Chr: Chr03 Coordinates: 43458625-43461817 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1752 bp · LXL04_014198|LXL04_014198|OH1004|cDNA

ATGGCAACCAACCTTCACAATTATAAAACTTTCAAACCTAATATCAACACGCTCACACTCACCGGAATAGAAATCAAGCTGGAACTGGTTGTAAGCTATCAAGTATCAACGGTCAAACAAGATGAACAAGCAAGACTTCATGAAGCTACAGGTACTAATTTCATCCTCTTCGCACAGCACCTCGCGTTTTCTGTCGGTTACTCACCGGCTAATTTCCCCCCTTTCGTTTTGATGCAGACTTGTGTCCTCAGAGTAAATAT...

CDS

Download CDS FASTA

1752 bp · LXL04_014198|LXL04_014198|OH1004|CDS

ATGGCAACCAACCTTCACAATTATAAAACTTTCAAACCTAATATCAACACGCTCACACTCACCGGAATAGAAATCAAGCTGGAACTGGTTGTAAGCTATCAAGTATCAACGGTCAAACAAGATGAACAAGCAAGACTTCATGAAGCTACAGGTACTAATTTCATCCTCTTCGCACAGCACCTCGCGTTTTCTGTCGGTTACTCACCGGCTAATTTCCCCCCTTTCGTTTTGATGCAGACTTGTGTCCTCAGAGTAAATAT...

Protein

Download Protein FASTA

583 aa · LXL04_014198|LXL04_014198|OH1004|PROTEIN

MATNLHNYKTFKPNINTLTLTGIEIKLELVVSYQVSTVKQDEQARLHEATGTNFILFAQHLAFSVGYSPANFPPFVLMQTCVLRVNIQCACDGCKQKIKKLLNKVDGVYKTSIDLDQGKVTVSGNADPAMLIKKLNKSGKHAELWGPQKGVNLLNNQFKNMGFDNKMQKGGGGGGGGKDKQKDGKGQQQMQMAMKGFKDMKAPNKDQKSVKFTLPGGGGGGGGGGGGGGGGGRFDDEDDFGDDDSFDDDDDEFDDEDDFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014198`
TK1151 ID	TkA02G448260
OH-1004 ID	LXL04_014198
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.700
Protein coverage (%)	TK1151 99.802 / OH-1004 87.993 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014198

Location Chr03:43458625-43461817 (-)

Description Similar to HIPP32: Heavy metal-associated isoprenylated plant protein 32

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06130`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g27690`	Heavy-metal-binding protein.	No verified direct reference in this release
`At3g05220`	Heavy-metal-binding protein.	No verified direct reference in this release
`At1g23000`	Heavy-metal-binding protein.	No verified direct reference in this release
`At1g56210`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014198 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G23000

ath:AT1G56210

ath:AT3G05220

ath:AT3G06130

ath:AT5G27690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.471

Rank 1 · LXL04_014198 · OH-1004

Nucleus0.351

Rank 2 · LXL04_014198 · OH-1004

Cell membrane0.284

Rank 3 · LXL04_014198 · OH-1004

Endoplasmic reticulum0.081

Rank 4 · LXL04_014198 · OH-1004

Extracellular0.070

Rank 5 · LXL04_014198 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403.33HMA90-141 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014198	`PF00403.33`	HMA	90	141	1e-12	49.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8K5`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 32	61.458%	Swiss-Prot	weak database homology
`Q84J88`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 36	54.651%	Swiss-Prot	weak database homology
`Q0WV37`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 34	60.294%	Swiss-Prot	weak database homology
`A2RVM8`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 37	53.425%	Swiss-Prot	weak database homology
`Q9C7J6`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 35	52.308%	Swiss-Prot	weak database homology

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