Gene Card
Gene overview
cDNA / CDS / Protein Sequences
402 bp · LXL04_013159|LXL04_013159|OH1004|cDNA
ATGCGAACAGTCGTGTTAATGGTGGTGGACGCGAATCGTTTTCGAGAAAAGCCGCGGAATCGATTTCGAACACAATCGATGCTCATTCTCGAATTTAGAAAGAAGGAAAATCAGAATCATATTAGTTGTTACAAAAATCGATCTTCTTCCTTCATCTATATCCCCAACTGGTTTCGACCACTGGTTATAACCAGATCAAGTGAAGGCGGCACCAACAAATTAACCAAAGTTCATTTGGTGCCAGGAGCATATAACGAAGT...
402 bp · LXL04_013159|LXL04_013159|OH1004|CDS
ATGCGAACAGTCGTGTTAATGGTGGTGGACGCGAATCGTTTTCGAGAAAAGCCGCGGAATCGATTTCGAACACAATCGATGCTCATTCTCGAATTTAGAAAGAAGGAAAATCAGAATCATATTAGTTGTTACAAAAATCGATCTTCTTCCTTCATCTATATCCCCAACTGGTTTCGACCACTGGTTATAACCAGATCAAGTGAAGGCGGCACCAACAAATTAACCAAAGTTCATTTGGTGCCAGGAGCATATAACGAAGT...
Protein
Download Protein FASTA133 aa · LXL04_013159|LXL04_013159|OH1004|PROTEIN
MRTVVLMVVDANRFREKPRNRFRTQSMLILEFRKKENQNHISCYKNRSSSFIYIPNWFRPLVITRSSEGGTNKLTKVHLVPGAYNEVVTKIDLLPSSISPTSFDHWVITRSSEGGANKLTKVHLVPGAYNEGP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013159 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013159 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr03:25164918-25165389 (-) | ||||||
| Description | Protein of unknown function | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009416 response to light stimulus Biological Process GO:0009646 response to absence of light Biological Process GO:0009651 response to salt stress Biological Process GO:0009658 chloroplast organization Biological Process GO:0009741 response to brassinosteroid Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0032502 developmental process Biological Process GO:1901259 chloroplast rRNA processing Biological Process GO:1902326 positive regulation of chlorophyll biosynthetic process Biological Process GO:1904143 positive regulation of carotenoid biosynthetic process Biological Process GO:0005634 nucleus Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT3G57180 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q8W4I6 | Arabidopsis thaliana | GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic | 53.846% | Swiss-Prot | weak database homology |