LXL04_012210 | RubberDandelionOmics

Gene overview

LXL04_012210

Reference: OH-1004 Chr: Chr03 Coordinates: 8306634-8307718 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

681 bp · LXL04_012210|LXL04_012210|OH1004|cDNA

ATGGCGTCTTCTCTATCCACTTTTCACCCAGTTTCTTCGCATCTTTCCAAGCAAAATCACGCCTCTAGTCTCTCATCTTCTTTCCTCTCGTCCCCTTCATCAATCCCCTTATCTTCCAATTCAAACATATCGCTGCAATTCCGTTGCAATAACAAGCAATTATGTTCTTCAGCTCCGAGGCCTCTTACAGTCATCGCCATGGCTCCTCCTAAACCTGGTGGCAAAGCGAAGAAAGTTACCGGAGTAATTAAGCTGGCGCT...

CDS

Download CDS FASTA

681 bp · LXL04_012210|LXL04_012210|OH1004|CDS

ATGGCGTCTTCTCTATCCACTTTTCACCCAGTTTCTTCGCATCTTTCCAAGCAAAATCACGCCTCTAGTCTCTCATCTTCTTTCCTCTCGTCCCCTTCATCAATCCCCTTATCTTCCAATTCAAACATATCGCTGCAATTCCGTTGCAATAACAAGCAATTATGTTCTTCAGCTCCGAGGCCTCTTACAGTCATCGCCATGGCTCCTCCTAAACCTGGTGGCAAAGCGAAGAAAGTTACCGGAGTAATTAAGCTGGCGCT...

Protein

Download Protein FASTA

226 aa · LXL04_012210|LXL04_012210|OH1004|PROTEIN

MASSLSTFHPVSSHLSKQNHASSLSSSFLSSPSSIPLSSNSNISLQFRCNNKQLCSSAPRPLTVIAMAPPKPGGKAKKVTGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVDKGSKDPQREKVGKVTIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPILTPKVKEVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012210`
TK1151 ID	TkA02G581650
OH-1004 ID	LXL04_012210
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012210

Location Chr03:8306634-8307718 (-)

Description Similar to RPL11: 50S ribosomal protein L11, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32990`	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012210 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003735 structural constituent of ribosome Molecular Function

GO:0070180 large ribosomal subunit rRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G32990

syr:SynRCC307_2358

syx:SynWH7803_2374

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984

Rank 1 · LXL04_012210 · OH-1004

Mitochondrion0.031

Rank 2 · LXL04_012210 · OH-1004

Cytoplasm0.020

Rank 3 · LXL04_012210 · OH-1004

Nucleus0.016

Rank 4 · LXL04_012210 · OH-1004

Peroxisome0.011

Rank 5 · LXL04_012210 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03946.20Ribosomal_L11_N83-140 aa

PF00298.25Ribosomal_L11145-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012210	`PF03946.20`	Ribosomal_L11_N	83	140	1.1e-28	99.4
LXL04_012210	`PF00298.25`	Ribosomal_L11	145	213	2.6e-27	95.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9MAP3`	Arabidopsis thaliana	Large ribosomal subunit protein uL11c	82.673%	Swiss-Prot	strong database homology

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