LXL04_011169 | RubberDandelionOmics

Gene overview

LXL04_011169

Reference: OH-1004 Chr: Chr02 Coordinates: 159312470-159316984 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3562 bp · LXL04_011169|LXL04_011169|OH1004|cDNA

ATGGCACATGGGAGGAAAAAGAAGGTGCAGCTTAGCAAGATGTACTCATTTAGGAGAGAACGATTCGAAGAGGATCATTCACAGATTGGAGGACCTGGGTTTTCTAGGGTGATTTATTGCAATGAAAATGGTGAATCAGAGGGTATGATTCAAAATTACGCCGATAATTATGTGAGGTTAACAAAGTACACACCAGTGACATTTCTCCCAAAATCGTTGTATGAACAGTTTCGAAGAGTCGCTAATTTCTACTTTCTTGT...

CDS

Download CDS FASTA

3546 bp · LXL04_011169|LXL04_011169|OH1004|CDS

ATGGCACATGGGAGGAAAAAGAAGGTGCAGCTTAGCAAGATGTACTCATTTAGGAGAGAACGATTCGAAGAGGATCATTCACAGATTGGAGGACCTGGGTTTTCTAGGGTGATTTATTGCAATGAAAATGGTGAATCAGAGGGTATGATTCAAAATTACGCCGATAATTATGTGAGGTTAACAAAGTACACACCAGTGACATTTCTCCCAAAATCGTTGTATGAACAGTTTCGAAGAGTCGCTAATTTCTACTTTCTTGT...

Protein

Download Protein FASTA

1181 aa · LXL04_011169|LXL04_011169|OH1004|PROTEIN

MAHGRKKKVQLSKMYSFRRERFEEDHSQIGGPGFSRVIYCNENGESEGMIQNYADNYVRLTKYTPVTFLPKSLYEQFRRVANFYFLVAGILAFTPLAPYSPVSAILPLIIVIGATMVKEGIEDWQRQQQDHEVNNRKTKVHRRGGVFESSQWKKIKVGDIVKVEKDQFFPADLLLLSSSYEDAICYVETMNLDGETNLKLKQSLDVTSSINEDSKFNNFKATVRCEDPNASLYTFVGTMQFQDQRYALSPQQLLLRDSKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011169`
TK1151 ID	TkA03G570130
OH-1004 ID	LXL04_011169
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011169

Location Chr02:159312470-159316984 (+)

Description Similar to ALA9: Putative phospholipid-transporting ATPase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68710`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g13210`	Involved in transport of phospholipids.	No verified direct reference in this release
`At3g25610`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g26130`	Involved in transport of phospholipids.	No verified direct reference in this release
`At3g27870`	Involved in transport of phospholipids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011169 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045332 phospholipid translocation Biological Process

GO:1901703 protein localization involved in auxin polar transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0090554 phosphatidylcholine floppase activity Molecular Function

GO:0140326 ATPase-coupled intramembrane lipid transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G13210

ath:AT1G26130

ath:AT1G68710

ath:AT3G25610

ath:AT3G27870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.525

Rank 1 · LXL04_011169 · OH-1004

Endoplasmic reticulum0.225

Rank 2 · LXL04_011169 · OH-1004

Cytoplasm0.192

Rank 3 · LXL04_011169 · OH-1004

Golgi apparatus0.166

Rank 4 · LXL04_011169 · OH-1004

Lysosome / Vacuole0.130

Rank 5 · LXL04_011169 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209.11PhoLip_ATPase_N38-105 aa

PF13246.13Cation_ATPase505-702 aa

PF00702.33Hydrolase652-730 aa

PF16212.12PhoLip_ATPase_C881-1131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011169	`PF16209.11`	PhoLip_ATPase_N	38	105	5.2e-22	78.1
LXL04_011169	`PF13246.13`	Cation_ATPase	505	702	8.1e-21	75.4
LXL04_011169	`PF00702.33`	Hydrolase	652	730	7.6e-13	50.0
LXL04_011169	`PF16212.12`	PhoLip_ATPase_C	881	1131	5.7e-90	302.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SX33`	Arabidopsis thaliana	Putative phospholipid-transporting ATPase 9	72.058%	Swiss-Prot	strong database homology
`Q9SAF5`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 11	70.554%	Swiss-Prot	strong database homology
`Q9LI83`	Arabidopsis thaliana	Phospholipid-transporting ATPase 10	71.489%	Swiss-Prot	strong database homology
`P57792`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 12	69.290%	Swiss-Prot	strong database homology
`Q9LK90`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 8	62.672%	Swiss-Prot	strong database homology

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