Gene Card
Gene overview
cDNA / CDS / Protein Sequences
654 bp · LXL04_011024|LXL04_011024|OH1004|cDNA
ATGTCGGATGGAGATGTCACCCAATTCACGTTCGAATCAGTTCACCAACTTCAGTTATGCAACTCCCTCCAAGTCCTCGGTAGATATCAGGAAATATTCGCTTTGCCATTCGTTTCTGGATCCGATTACGCCGGCGTCGTCGAGTCCGTCGGTCCCACAGtcaacaaattcaaaatcaGCGATCCTGTATGTTCAGTTGTCGGTGTAGGCTCGGAGTTCCCGATGGATGTCATCTGGTCGTTTACAATGAAGTTACGATA...
654 bp · LXL04_011024|LXL04_011024|OH1004|CDS
ATGTCGGATGGAGATGTCACCCAATTCACGTTCGAATCAGTTCACCAACTTCAGTTATGCAACTCCCTCCAAGTCCTCGGTAGATATCAGGAAATATTCGCTTTGCCATTCGTTTCTGGATCCGATTACGCCGGCGTCGTCGAGTCCGTCGGTCCCACAGTCAACAAATTCAAAATCAGCGATCCTGTATGTTCAGTTGTCGGTGTAGGCTCGGAGTTCCCGATGGATGTCATCTGGTCGTTTACAATGAAGTTACGATA...
Protein
Download Protein FASTA217 aa · LXL04_011024|LXL04_011024|OH1004|PROTEIN
MSDGDVTQFTFESVHQLQLCNSLQVLGRYQEIFALPFVSGSDYAGVVESVGPTVNKFKISDPVCSVVGVGSEFPMDVIWSFTMKLRYLLHKSPSCSTFKLKKEYEVGITEYAIDDVVEKLIDRGKLVNVLTPSTLINGVESVDDGSIAYGYAFVDYAALRFWDGSINDDASCASCVAVGALLMQISPAEVLFESQGKSPFNLDLNEYLGKFHLPGVN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011024 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011024 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr02:156649745-156652275 (-) | ||||||
| Description | Similar to MSH7: DNA mismatch repair protein MSH7 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006298 mismatch repair Biological Process GO:0005634 nucleus Cellular Component GO:0032301 MutSalpha complex Cellular Component GO:0005524 ATP binding Molecular Function GO:0030983 mismatched DNA binding Molecular Function GO:0140664 ATP-dependent DNA damage sensor activity Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT3G24495 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9SMV7 | Arabidopsis thaliana | DNA mismatch repair protein MSH7 | 40.645% | Swiss-Prot | moderate database homology |