Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1620 bp · LXL04_010420|LXL04_010420|OH1004|cDNA
ATGGCTGATAACATGAACGATGATATGGTTATGGATCTTGATTTGAACCAAGAGCCATTAGTGGACCTGCCACCACCTCCACCCTTTGGTTACGGTCCTTTGTTAAACGAGCTAGAGACCGCACGCGGTAGGATCGAGGATCGTATTAGGCAACTTGAAGCTGTTACCGCTAGGGCTAGACAGCGCCAGCGTTGGCGACAGGCAAGAAACAATCCGGAATTGAGTTACATGACGGTAATCGAGCCAGAAGTTGTTGCCGG...
1620 bp · LXL04_010420|LXL04_010420|OH1004|CDS
ATGGCTGATAACATGAACGATGATATGGTTATGGATCTTGATTTGAACCAAGAGCCATTAGTGGACCTGCCACCACCTCCACCCTTTGGTTACGGTCCTTTGTTAAACGAGCTAGAGACCGCACGCGGTAGGATCGAGGATCGTATTAGGCAACTTGAAGCTGTTACCGCTAGGGCTAGACAGCGCCAGCGTTGGCGACAGGCAAGAAACAATCCGGAATTGAGTTACATGACGGTAATCGAGCCAGAAGTTGTTGCCGG...
Protein
Download Protein FASTA539 aa · LXL04_010420|LXL04_010420|OH1004|PROTEIN
MADNMNDDMVMDLDLNQEPLVDLPPPPPFGYGPLLNELETARGRIEDRIRQLEAVTARARQRQRWRQARNNPELSYMTVIEPEVVAGNQNHDVNTVPDVDEIVNTPDVVDERANGERGRNSKRDISQLAKALEMDLDSKKTDNNGGGDDESGGFFDCNICLEMARDPILTCCGHLFCWSCFYQLSYVDSSAKECPVCKGEVTDSSITPIYGNGKNQPILKLESGVKIPPRPRARRVESIRQQRVIRGISHIPVAEALRRI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010420 |
|---|---|
| TK1151 ID | TkA03G526710 |
| OH-1004 ID | LXL04_010420 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 95.700 |
| Protein coverage (%) | TK1151 89.744 / OH-1004 51.763Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010420 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:146331991-146337307 (-) | |||||||||
| Description | Similar to RMA2: E3 ubiquitin-protein ligase RMA2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009617 response to bacterium Biological Process GO:0010507 negative regulation of autophagy Biological Process GO:0016567 protein ubiquitination Biological Process GO:0030163 protein catabolic process Biological Process GO:0031648 protein destabilization Biological Process GO:0036503 ERAD pathway Biological Process GO:0055085 transmembrane transport Biological Process GO:0070534 protein K63-linked ubiquitination Biological Process GO:0070936 protein K48-linked ubiquitination Biological Process GO:0071456 cellular response to hypoxia Biological Process GO:1904380 endoplasmic reticulum mannose trimming Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT4G27470 ath:AT4G28270 hsa:6048 mmu:54197 rno:407784 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14634.13zf-RING_5156-198 aaPF13920.13zf-C3HC4_3157-203 aaPF13445.13zf-RING_UBOX157-195 aaPF13923.13zf-C3HC4_2157-197 aaPF00097.32zf-C3HC4157-197 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010420 | PF14634.13 | zf-RING_5 | 156 | 198 | 2.2e-08 | 34.6 |
| LXL04_010420 | PF13920.13 | zf-C3HC4_3 | 157 | 203 | 8.7e-08 | 32.6 |
| LXL04_010420 | PF13445.13 | zf-RING_UBOX | 157 | 195 | 2.4e-07 | 31.3 |
| LXL04_010420 | PF13923.13 | zf-C3HC4_2 | 157 | 197 | 8.5e-07 | 29.4 |
| LXL04_010420 | PF00097.32 | zf-C3HC4 | 157 | 197 | 4.5e-06 | 27.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.