Gene Card
Gene overview
cDNA / CDS / Protein Sequences
687 bp · LXL04_009372|LXL04_009372|OH1004|cDNA
ATGGGAAGGGGAAAAGTAGAGCTAAAGAGAATAGAGAATCCAACAAACAGGCAAGTCACCTTCTCCAAGAGAAGAGATGGTCTCCTCAAGAAAGCCATTGAACTCTCCATTCTCTGTGATGCTGAGGTGGCACTTCTTGTCTTCTCTCCTTCTGGCAAAGCTTATCACTTCTCCAGCCATGACATGGATAGGACCATCAGGAGGTACAGAAACGAAAAGGGTCTGCATAAAATGAACAGCCATGGAGTTAGAACTATCGA...
687 bp · LXL04_009372|LXL04_009372|OH1004|CDS
ATGGGAAGGGGAAAAGTAGAGCTAAAGAGAATAGAGAATCCAACAAACAGGCAAGTCACCTTCTCCAAGAGAAGAGATGGTCTCCTCAAGAAAGCCATTGAACTCTCCATTCTCTGTGATGCTGAGGTGGCACTTCTTGTCTTCTCTCCTTCTGGCAAAGCTTATCACTTCTCCAGCCATGACATGGATAGGACCATCAGGAGGTACAGAAACGAAAAGGGTCTGCATAAAATGAACAGCCATGGAGTTAGAACTATCGA...
Protein
Download Protein FASTA228 aa · LXL04_009372|LXL04_009372|OH1004|PROTEIN
MGRGKVELKRIENPTNRQVTFSKRRDGLLKKAIELSILCDAEVALLVFSPSGKAYHFSSHDMDRTIRRYRNEKGLHKMNSHGVRTIEVWNNEMDEMKKTIEILETKHKHLAGEDISSLGMKELKQLERQLRMGVDRVRSKKARYFSRKRFNFLRWRLLTEQISLLKRNHKTLQEEHTNLQKKMKLHELLNEADEYSGLDSSDHASQSVIPDEQPQPPLNMNQLGFSKN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009372 |
|---|---|
| TK1151 ID | TkA03G430280 |
| OH-1004 ID | LXL04_009372 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 91.228Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009372 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:124346306-124347887 (-) | |||||||||
| Description | Similar to MADS6: MADS-box transcription factor 6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0009553 embryo sac development Biological Process GO:0010022 meristem determinacy Biological Process GO:0010093 specification of floral organ identity Biological Process GO:0010094 specification of carpel identity Biological Process GO:0010582 floral meristem determinacy Biological Process GO:0030154 cell differentiation Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0048316 seed development Biological Process GO:0048437 floral organ development Biological Process | |||||||||
| KEGG gene cross-reference | dosa:Os02g0682200 vvi:100232870 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00319.24SRF-TF10-57 aaPF01486.23K-box85-183 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009372 | PF00319.24 | SRF-TF | 10 | 57 | 2.4e-26 | 91.6 |
| LXL04_009372 | PF01486.23 | K-box | 85 | 183 | 3e-20 | 72.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.