LXL04_008871 | RubberDandelionOmics

Gene overview

LXL04_008871

Reference: OH-1004 Chr: Chr02 Coordinates: 110816794-110818459 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1197 bp · LXL04_008871|LXL04_008871|OH1004|cDNA

TGCAGTGTCAGGAGAAAATTGGATTGAAGATATCTGACTAACGGAAAAGAGTTTTCATGATCTTTATGCAGTAAAATGGCAACTCCAGTTGAACCACCAAATGGGATTAAATCAGAAGGAAAACATTACTTTTCAATGTGGAAGGCTTTATTTGAAATCGACACAAAATATGTTCCAATCAAACCCATCGGCCGAGGTGCATATGGGATCGTGTGTTCTTCTGTTAACCGTGAAACCAACGAGAAAGTAGCAATCAAGAA...

CDS

Download CDS FASTA

1122 bp · LXL04_008871|LXL04_008871|OH1004|CDS

ATGGCAACTCCAGTTGAACCACCAAATGGGATTAAATCAGAAGGAAAACATTACTTTTCAATGTGGAAGGCTTTATTTGAAATCGACACAAAATATGTTCCAATCAAACCCATCGGCCGAGGTGCATATGGGATCGTGTGTTCTTCTGTTAACCGTGAAACCAACGAGAAAGTAGCAATCAAGAAAATACACAATGCCTTTGATAACCGTATCGATGCCCTTAGAACTTTACGTGAACTCAAACTCCTTCGACATCTTAG...

Protein

Download Protein FASTA

373 aa · LXL04_008871|LXL04_008871|OH1004|PROTEIN

MATPVEPPNGIKSEGKHYFSMWKALFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIHNAFDNRIDALRTLRELKLLRHLRHDNVIRLVDVMVPIQRRSFKDVYLVYELMDTDLHQIIKSSQALTNDHCQYFLFQLLRGLKYLHSVNILHRDLKPGNLLINANCDLKICDFGLARTNTGKDQFMTEYVVTRWYRAPELLLCCDNYDTSIDVWSVGCIFAELLGRKPLFPGTECLNQLKLIVNILGSQREDNIEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008871`
TK1151 ID	TkA03G318510
OH-1004 ID	LXL04_008871
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008871

Location Chr02:110816794-110818459 (-)

Description Similar to NTF3: Mitogen-activated protein kinase homolog NTF3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10210`	Mitogen-activated protein kinase 1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0148100`	Mitogen-activated protein kinase 3.	No verified direct reference in this release
`Os06g0699400`	Mitogen-activated protein kinase 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008871 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004707 MAP kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10210

dosa:Os02g0148100

dosa:Os06g0699400

osa:4328297

osa:4341956

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.614

Rank 1 · LXL04_008871 · OH-1004

Nucleus0.589

Rank 2 · LXL04_008871 · OH-1004

Cell membrane0.062

Rank 3 · LXL04_008871 · OH-1004

Mitochondrion0.044

Rank 4 · LXL04_008871 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_008871 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase33-319 aa

PF07714.24PK_Tyr_Ser-Thr36-228 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008871	`PF00069.32`	Pkinase	33	319	7.1e-68	229.6
LXL04_008871	`PF07714.24`	PK_Tyr_Ser-Thr	36	228	4.8e-32	112.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39021`	Arabidopsis thaliana	Mitogen-activated protein kinase 1	82.480%	Swiss-Prot	strong database homology
`Q6Z437`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 3	81.030%	Swiss-Prot	strong database homology
`Q5Z859`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 4	81.301%	Swiss-Prot	strong database homology

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