LXL04_008290 | RubberDandelionOmics

Gene overview

LXL04_008290

Reference: OH-1004 Chr: Chr02 Coordinates: 95884243-95886936 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

980 bp · LXL04_008290|LXL04_008290|OH1004|cDNA

ATGAAAATCTCCGCCAAACTCAACCCCAAACACATCTTCCGATCAAAGAAAAGCAGCTCCGTTTCCAGATCTGATCCATCTTCTTTCGGTTCCTACGCTACGACGTCCTCTGCCTCACCGGAACCCAGCCATGGCCATCACAAGTCCACGTACAGTTCGAGTTGGTGCAAGCGTTCAGGTGGACTTGTAAACCTTGGATCTGAACGAAAACAggaggaagaagatgaagtagAGAAAGCGGAGTATTCTCCAAGAGTTTA...

CDS

Download CDS FASTA

693 bp · LXL04_008290|LXL04_008290|OH1004|CDS

ATGAAAATCTCCGCCAAACTCAACCCCAAACACATCTTCCGATCAAAGAAAAGCAGCTCCGTTTCCAGATCTGATCCATCTTCTTTCGGTTCCTACGCTACGACGTCCTCTGCCTCACCGGAACCCAGCCATGGCCATCACAAGTCCACGTACAGTTCGAGTTGGTGCAAGCGTTCAGGTGGACTTGTAAACCTTGGATCTGAACGAAAACAGGAGGAAGAAGATGAAGTAGAGAAAGCGGAGTATTCTCCAAGAGTTTA...

Protein

Download Protein FASTA

230 aa · LXL04_008290|LXL04_008290|OH1004|PROTEIN

MKISAKLNPKHIFRSKKSSSVSRSDPSSFGSYATTSSASPEPSHGHHKSTYSSSWCKRSGGLVNLGSERKQEEEDEVEKAEYSPRVYNSEMAAYMAASTMTAVVAAPEKEKQEAARDLQSLDSSPCEWFICDDSSIYTRCFVIQGLDSVASWQANLFFEPTKFEVKLKTNLLLHIRSMGSAIMKAEEISVTQFVEVQNLGMVISTPVDAFNILMASYFETNLHHANAAAS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008290`
TK1151 ID	TkA06G030750
OH-1004 ID	LXL04_008290
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 58.333 / OH-1004 45.652 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008290

Location Chr02:95884243-95886936 (-)

Description Similar to PLIP1: Phospholipase A1 PLIP1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61680`	Sn-1-specific phospholipase A1 involved in seed oil biosynthesis.	A Plastid Phosphatidylglycerol Lipase Contributes to the Export of Acyl Groups from Plastids for Seed Oil Biosynthesis.2017 · DOI: 10.1105/tpc.17.00397
`At3g62590`	Sn-1-specific phospholipase A1 that catalyzes the initial step of oxylipins and jasmonate (JA) biosynthesis.	Two Abscisic Acid-Responsive Plastid Lipase Genes Involved in Jasmonic Acid Biosynthesis in <i>Arabidopsis thaliana</i>.2018 · DOI: 10.1105/tpc.18.00250
`At1g02660`	Sn-1-specific phospholipase A1 that catalyzes the initial step of oxylipins and jasmonate (JA) biosynthesis.	Two Abscisic Acid-Responsive Plastid Lipase Genes Involved in Jasmonic Acid Biosynthesis in <i>Arabidopsis thaliana</i>.2018 · DOI: 10.1105/tpc.18.00250

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008290 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0008970 glycerophospholipid phospholipase A1 activity Molecular Function

KEGG gene cross-reference

ath:AT1G02660

ath:AT3G61680

ath:AT3G62590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.283

Rank 1 · LXL04_008290 · OH-1004

Cytoplasm0.272

Rank 2 · LXL04_008290 · OH-1004

Plastid0.243

Rank 3 · LXL04_008290 · OH-1004

Cell membrane0.211

Rank 4 · LXL04_008290 · OH-1004

Endoplasmic reticulum0.098

Rank 5 · LXL04_008290 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7Y220`	Arabidopsis thaliana	Phospholipase A1 PLIP1, chloroplastic	71.910%	Swiss-Prot	weak database homology
`Q940L4`	Arabidopsis thaliana	Phospholipase A1 PLIP3, chloroplastic	53.261%	Swiss-Prot	weak database homology
`F4HXL0`	Arabidopsis thaliana	Phospholipase A1 PLIP2, chloroplastic	46.729%	Swiss-Prot	weak database homology

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