LXL04_007840 | RubberDandelionOmics

Gene overview

LXL04_007840

Reference: OH-1004 Chr: Chr02 Coordinates: 65143518-65145409 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

504 bp · LXL04_007840|LXL04_007840|OH1004|cDNA

ATGCTGCTAACTCACATTGTGGATTTAGTAGGCGTATACTACGATGCCAGAGACAACGTCATGTTTGGGTTTCCGATGGCCTTCACCACCACAATGCTGTCGTGGAGTGTGATTGAATTTGGTGGGATGATTGAGTTTGGGTGGGTGATGCAACCAAGGATCATGCGTGTTGGGAGAGACCTGAAGACATGTACACCATCTGTTTGTGGAAATGTCTTCCTGCGCCTGACCCTTGGAGAAGATATAAAACAAAACAAGGT...

CDS

Download CDS FASTA

504 bp · LXL04_007840|LXL04_007840|OH1004|CDS

ATGCTGCTAACTCACATTGTGGATTTAGTAGGCGTATACTACGATGCCAGAGACAACGTCATGTTTGGGTTTCCGATGGCCTTCACCACCACAATGCTGTCGTGGAGTGTGATTGAATTTGGTGGGATGATTGAGTTTGGGTGGGTGATGCAACCAAGGATCATGCGTGTTGGGAGAGACCTGAAGACATGTACACCATCTGTTTGTGGAAATGTCTTCCTGCGCCTGACCCTTGGAGAAGATATAAAACAAAACAAGGT...

Protein

Download Protein FASTA

167 aa · LXL04_007840|LXL04_007840|OH1004|PROTEIN

MLLTHIVDLVGVYYDARDNVMFGFPMAFTTTMLSWSVIEFGGMIEFGWVMQPRIMRVGRDLKTCTPSVCGNVFLRLTLGEDIKQNKVLVQLGDILDRGENVTNLFSTFIYILYVQQHLTLGQMLMELKCVTMLKKMGKTYVGWKTLSLKVKCIVCLVLQMKLRKSQY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007840`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007840

Location Chr02:65143518-65145409 (-)

Description Similar to At4g02290: Endoglucanase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02290`	Endoglucanase 17.	No verified direct reference in this release
`At1g02800`	Endoglucanase 1.	No verified direct reference in this release
`At4g39010`	Endoglucanase 24.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0443300`	Endoglucanase 11.	No verified direct reference in this release
`Os02g0123700`	Endoglucanase 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007840 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007389 pattern specification process Biological Process

GO:0009624 response to nematode Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0010047 fruit dehiscence Biological Process

GO:0030245 cellulose catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:1990059 fruit valve development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0008810 cellulase activity Molecular Function

KEGG gene cross-reference

ath:AT1G02800

ath:AT4G02290

ath:AT4G39010

dosa:Os02g0123700

dosa:Os04g0443300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.343

Rank 1 · LXL04_007840 · OH-1004

Nucleus0.218

Rank 2 · LXL04_007840 · OH-1004

Mitochondrion0.171

Rank 3 · LXL04_007840 · OH-1004

Endoplasmic reticulum0.142

Rank 4 · LXL04_007840 · OH-1004

Extracellular0.127

Rank 5 · LXL04_007840 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759.26Glyco_hydro_97-44 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007840	`PF00759.26`	Glyco_hydro_9	7	44	4.8e-11	43.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81416`	Arabidopsis thaliana	Endoglucanase 17	82.051%	Swiss-Prot	weak database homology
`Q9SRX3`	Arabidopsis thaliana	Endoglucanase 1	79.487%	Swiss-Prot	weak database homology
`Q93YQ7`	Arabidopsis thaliana	Endoglucanase 24	78.947%	Swiss-Prot	weak database homology
`Q7XTH4`	Oryza sativa subsp. japonica	Endoglucanase 11	50.685%	Swiss-Prot	weak database homology
`Q6Z715`	Oryza sativa subsp. japonica	Endoglucanase 4	78.947%	Swiss-Prot	weak database homology

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