LXL04_007382 | RubberDandelionOmics

Gene overview

LXL04_007382

Reference: OH-1004 Chr: Chr02 Coordinates: 46261277-46263487 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

624 bp · LXL04_007382|LXL04_007382|OH1004|cDNA

ATGCCTCCACCTCAACAACTCATTAATCAGGAGGTAAATCAAGATGAACTGGAGACCAAGCATATTTTTTCATCAGATCCAGGAGGGAATAAAAGCTTGTACAGTTATAAGGATGAGTTTTTTGCAGTTACAGGAGAGGCTAAAGAGCACAGGTTTTTGAAGCTGTATCTCAGATCTGTTTTACTTGAAGCTGGTAAAATGGTAATATTGACAATAGTGGTGGAGTTCTTAAAGATCAAGAGGGAGATTAAGATCCTACA...

CDS

Download CDS FASTA

624 bp · LXL04_007382|LXL04_007382|OH1004|CDS

ATGCCTCCACCTCAACAACTCATTAATCAGGAGGTAAATCAAGATGAACTGGAGACCAAGCATATTTTTTCATCAGATCCAGGAGGGAATAAAAGCTTGTACAGTTATAAGGATGAGTTTTTTGCAGTTACAGGAGAGGCTAAAGAGCACAGGTTTTTGAAGCTGTATCTCAGATCTGTTTTACTTGAAGCTGGTAAAATGGTAATATTGACAATAGTGGTGGAGTTCTTAAAGATCAAGAGGGAGATTAAGATCCTACA...

Protein

Download Protein FASTA

207 aa · LXL04_007382|LXL04_007382|OH1004|PROTEIN

MPPPQQLINQEVNQDELETKHIFSSDPGGNKSLYSYKDEFFAVTGEAKEHRFLKLYLRSVLLEAGKMVILTIVVEFLKIKREIKILQNLCGGPNIIKATTISYTKFMALEYCHSQGIMHRDVKPHNIIASEDIHSKEEAGKSYIDVPIVKVRWSAKRGPEFTWEREDQMKLKYPHLFANSKEAATSLNFGTKFQRRDDVTPVKNFVF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007382`
TK1151 ID	TkA02G014090
OH-1004 ID	LXL04_007382
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	61.800
Protein coverage (%)	TK1151 32.174 / OH-1004 53.140 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007382

Location Chr02:46261277-46263487 (+)

Description Similar to ACK2: Casein kinase II subunit alpha

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67380`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Cloning and characterization of two cDNAs encoding casein kinase II catalytic subunits in Arabidopsis thaliana.1993 · DOI: 10.1007/bf00019944 Reconstitution of Arabidopsis casein kinase II from recombinant subunits and phosphorylation of transcription factor GBF1.1995 · DOI: 10.1105/tpc.7.1.105

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B6F107`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`UniProt: Q9AR27`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007382 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006281 DNA repair Biological Process

GO:0006325 chromatin organization Biological Process

GO:0006974 DNA damage response Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009648 photoperiodism Biological Process

GO:0009908 flower development Biological Process

GO:0010225 response to UV-C Biological Process

GO:0010229 inflorescence development Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0023052 signaling Biological Process

KEGG gene cross-reference

ath:AT5G67380

spo:2541972

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.455

Rank 1 · LXL04_007382 · OH-1004

Cytoplasm0.409

Rank 2 · LXL04_007382 · OH-1004

Mitochondrion0.094

Rank 3 · LXL04_007382 · OH-1004

Cell membrane0.079

Rank 4 · LXL04_007382 · OH-1004

Endoplasmic reticulum0.066

Rank 5 · LXL04_007382 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase97-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007382	`PF00069.32`	Pkinase	97	133	1.5e-09	38.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q08467`	Arabidopsis thaliana	Casein kinase II subunit alpha-1	34.524%	Swiss-Prot	weak database homology
`B6F107`	Oryza sativa subsp. japonica	Casein kinase II subunit alpha-2	36.905%	Swiss-Prot	weak database homology
`Q9AR27`	Oryza sativa subsp. indica	Casein kinase II subunit alpha-2	36.905%	Swiss-Prot	weak database homology

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