LXL04_006612 | RubberDandelionOmics

Gene overview

LXL04_006612

Reference: OH-1004 Chr: Chr02 Coordinates: 19617296-19618418 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

882 bp · LXL04_006612|LXL04_006612|OH1004|cDNA

ATGACACATTCATCCAGAATATCTATAAGAAACATTGTTATGCATTTCTTAATTGGATTTGCAGTATTGTTGGCTAAGATAGATGCCAAATCAACTACATTTCTTCAAGATTTTCGTGTTACATGGTCTGATTCTCACATCAAACAACTCGATGGCGGGATGGGCATCCAATTACTCCTTGACCAAAACTCTGgATGCGGGTTTGcttcaaaaagtaaatattTGTTTGGACGTGTGAGCATGAAGATCAAACTCATTCC...

CDS

Download CDS FASTA

882 bp · LXL04_006612|LXL04_006612|OH1004|CDS

ATGACACATTCATCCAGAATATCTATAAGAAACATTGTTATGCATTTCTTAATTGGATTTGCAGTATTGTTGGCTAAGATAGATGCCAAATCAACTACATTTCTTCAAGATTTTCGTGTTACATGGTCTGATTCTCACATCAAACAACTCGATGGCGGGATGGGCATCCAATTACTCCTTGACCAAAACTCTGGATGCGGGTTTGCTTCAAAAAGTAAATATTTGTTTGGACGTGTGAGCATGAAGATCAAACTCATTCC...

Protein

Download Protein FASTA

293 aa · LXL04_006612|LXL04_006612|OH1004|PROTEIN

MTHSSRISIRNIVMHFLIGFAVLLAKIDAKSTTFLQDFRVTWSDSHIKQLDGGMGIQLLLDQNSGCGFASKSKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDNVRDELDFEFLGNRTGQPYSVQTNVYAHGKGDREQRVNLWFDPAADFHVYSILWNHHHVVFSVDEVPIRVYKNNEAKGVPFPKFQPMGVFSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPSVCASNPANWWEGTGYQQLDSIAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006612`
TK1151 ID	TkA03G052570
OH-1004 ID	LXL04_006612
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006612

Location Chr02:19617296-19618418 (+)

Description Similar to XTH6: Probable xyloglucan endotransglucosylase/hydrolase protein 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65730`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g37800`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006612 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009835 fruit ripening Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

KEGG gene cross-reference

ath:AT4G37800

ath:AT5G65730

nta:107785465

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.299

Rank 1 · LXL04_006612 · OH-1004

Extracellular0.233

Rank 2 · LXL04_006612 · OH-1004

Golgi apparatus0.205

Rank 3 · LXL04_006612 · OH-1004

Endoplasmic reticulum0.199

Rank 4 · LXL04_006612 · OH-1004

Cytoplasm0.157

Rank 5 · LXL04_006612 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1636-216 aa

PF06955.20XET_C242-289 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006612	`PF00722.29`	Glyco_hydro_16	36	216	3e-63	213.2
LXL04_006612	`PF06955.20`	XET_C	242	289	4e-19	68.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LF99`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 6	72.401%	Swiss-Prot	strong database homology
`Q8LER3`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 7	72.759%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card