Gene Card
Gene overview
cDNA / CDS / Protein Sequences
6024 bp · LXL04_006247|LXL04_006247|OH1004|cDNA
ATGGAGTCCTCTTCGAGTTTCAAAGTGAAGGTTAGACGAAAATGCTATATTCCTGGTGCAATTTTTGGTCCATTTTCATTCATCAACATATATTCAGGAAAAAAGGTTGTTGATGCTGAAAATGGCATGAAAAACATGATCGAGGTCGCGGTTACTTTGCGGATACTTCAGTTACTCTATAAAGAATGTTCGTCATCAAAGCAGAAGATTAGCATTGCGGTGTTATCGCCAAACCTTTCTCAACTTCAATCTCTGCAACA...
6024 bp · LXL04_006247|LXL04_006247|OH1004|CDS
ATGGAGTCCTCTTCGAGTTTCAAAGTGAAGGTTAGACGAAAATGCTATATTCCTGGTGCAATTTTTGGTCCATTTTCATTCATCAACATATATTCAGGAAAAAAGGTTGTTGATGCTGAAAATGGCATGAAAAACATGATCGAGGTCGCGGTTACTTTGCGGATACTTCAGTTACTCTATAAAGAATGTTCGTCATCAAAGCAGAAGATTAGCATTGCGGTGTTATCGCCAAACCTTTCTCAACTTCAATCTCTGCAACA...
Protein
Download Protein FASTA2007 aa · LXL04_006247|LXL04_006247|OH1004|PROTEIN
MESSSSFKVKVRRKCYIPGAIFGPFSFINIYSGKKVVDAENGMKNMIEVAVTLRILQLLYKECSSSKQKISIAVLSPNLSQLQSLQQKIEIHYENNEFLKVKVGFFHDYKGTDDVVLVSTVGSDGDERYDVVNINGYLKSERRCLWILGDERVLQKGGSKWEPLILEAKARRCFFQADEHKDLAKVIVEVKKDLDELDELLIGESSLFKSTTWKVLFSSKFVTSFSNIESWETKKLVLLMLRKLSSGWRPKQSSTAACIV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006247 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006247 |
|---|---|
| Location | Chr02:4956421-4965465 (+) |
| Description | Similar to TRANK1: TPR and ankyrin repeat-containing protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | No functional description available |
| KEGG gene cross-reference | hsa:9881 mmu:320429 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13087.13AAA_1222-143 aaPF00580.28UvrD-helicase576-662 aaPF13361.13UvrD_C793-876 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006247 | PF13087.13 | AAA_12 | 22 | 143 | 4.5e-10 | 40.1 |
| LXL04_006247 | PF00580.28 | UvrD-helicase | 576 | 662 | 4e-09 | 37.3 |
| LXL04_006247 | PF13361.13 | UvrD_C | 793 | 876 | 4.1e-06 | 27.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.