LXL04_005995 | RubberDandelionOmics

Gene overview

LXL04_005995

Reference: OH-1004 Chr: Chr01 Coordinates: 176729100-176732342 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2118 bp · LXL04_005995|LXL04_005995|OH1004|cDNA

ATGGCGGATGATCAAGGTTTTGAAACATGGGATAGCGAATTCTTGGAAAAAGCTATCCAAGCCACCGACGCCGCCGCTTGTTCTTCCTCCTCCTCAAACACTTATCAACCGCCACCAAAACTATTCCCGCCGCCTCCGCCACCCCATTATGCTCCTCACATCAGTTATTCTCCCCCTAGAGAGTTGTCTCAGAGAGTGAAAGAAGAGAATCACAGAAACGTTTCCGATACGGGTTTCGATTTCTCAATCTCTGTAAATGG...

CDS

Download CDS FASTA

2118 bp · LXL04_005995|LXL04_005995|OH1004|CDS

ATGGCGGATGATCAAGGTTTTGAAACATGGGATAGCGAATTCTTGGAAAAAGCTATCCAAGCCACCGACGCCGCCGCTTGTTCTTCCTCCTCCTCAAACACTTATCAACCGCCACCAAAACTATTCCCGCCGCCTCCGCCACCCCATTATGCTCCTCACATCAGTTATTCTCCCCCTAGAGAGTTGTCTCAGAGAGTGAAAGAAGAGAATCACAGAAACGTTTCCGATACGGGTTTCGATTTCTCAATCTCTGTAAATGG...

Protein

Download Protein FASTA

705 aa · LXL04_005995|LXL04_005995|OH1004|PROTEIN

MADDQGFETWDSEFLEKAIQATDAAACSSSSSNTYQPPPKLFPPPPPPHYAPHISYSPPRELSQRVKEENHRNVSDTGFDFSISVNGINRALSSAPPRELIQRLKEDNHRNAPDIGFDCPASLNGINRGLNSAPPFQSSSRLHEEDKHCKQQEINRLKEELGRVSKVLTNLEQECLELRKDREKNEKHFRAVPPVNGSKDAEASCTTKSNTKSKNHFEEESSIHPGTKGVIPCKTVGVQTDEHTVSDELTIKNNLLITYH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005995`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005995

Location Chr01:176729100-176732342 (-)

Description Similar to SUV2: Protein SENSITIVE TO UV 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45610`	Required for tolerance to DNA-damaging and cross-linking agents such as UVB irradiation, gamma-radiation, aphidicolin, ionizing radiation and hydroxyurea (HU), cisplatin (CDDP) and mitomycin C (MMC).	The Arabidopsis ATRIP ortholog is required for a programmed response to replication inhibitors.2009 · DOI: 10.1111/j.1365-313x.2009.03975.x A UVB-hypersensitive mutant in Arabidopsis thaliana is defective in the DNA damage response.2009 · DOI: 10.1111/j.1365-313x.2009.03974.x SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.2017 · DOI: 10.1111/pce.12992

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005995 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006974 DNA damage response Biological Process

GO:0010044 response to aluminum ion Biological Process

GO:0010212 response to ionizing radiation Biological Process

GO:0010224 response to UV-B Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:0072710 response to hydroxyurea Biological Process

GO:0072718 response to cisplatin Biological Process

GO:1902751 positive regulation of cell cycle G2/M phase transition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G45610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.614

Rank 1 · LXL04_005995 · OH-1004

Cytoplasm0.320

Rank 2 · LXL04_005995 · OH-1004

Cell membrane0.104

Rank 3 · LXL04_005995 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_005995 · OH-1004

Golgi apparatus0.043

Rank 5 · LXL04_005995 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28652.1SUV2_N261-368 aa

PF28619.1SUV2_M455-560 aa

PF28655.1SUV2_C573-704 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005995	`PF28652.1`	SUV2_N	261	368	3.7e-34	118.6
LXL04_005995	`PF28619.1`	SUV2_M	455	560	1.5e-36	125.5
LXL04_005995	`PF28655.1`	SUV2_C	573	704	7.1e-44	149.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`C8KI33`	Arabidopsis thaliana	Protein SENSITIVE TO UV 2	34.006%	Swiss-Prot	moderate database homology

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