LXL04_005912 | RubberDandelionOmics

Gene overview

LXL04_005912

Reference: OH-1004 Chr: Chr01 Coordinates: 175626371-175630841 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_005912|LXL04_005912|OH1004|cDNA

ATGGATGTTGTGACAAGAATGGTGTCCGAGAGACCCGTGGTGATATTTAGCAGAAGTTCGTGTTCTATGTCTCACACTGTCAAGTCTTTGTTTTTCGAATTTGGAGTAAATCCGGCTGTTTATGAGTTAGATGAGATCTCTAGAGGTGGCGAAATCGAGCAAGCACTTTTGAGGCTTGGGCGGAACCCTATTATCCCTGCGGTGTTTATAGGTGGTGAATTTGTTGGTGGGGCTAATGAAATTATTAGCCTTCACCTTCA...

CDS

Download CDS FASTA

525 bp · LXL04_005912|LXL04_005912|OH1004|CDS

ATGGATGTTGTGACAAGAATGGTGTCCGAGAGACCCGTGGTGATATTTAGCAGAAGTTCGTGTTCTATGTCTCACACTGTCAAGTCTTTGTTTTTCGAATTTGGAGTAAATCCGGCTGTTTATGAGTTAGATGAGATCTCTAGAGGTGGCGAAATCGAGCAAGCACTTTTGAGGCTTGGGCGGAACCCTATTATCCCTGCGGTGTTTATAGGTGGTGAATTTGTTGGTGGGGCTAATGAAATTATTAGCCTTCACCTTCA...

Protein

Download Protein FASTA

174 aa · LXL04_005912|LXL04_005912|OH1004|PROTEIN

MDVVTRMVSERPVVIFSRSSCSMSHTVKSLFFEFGVNPAVYELDEISRGGEIEQALLRLGRNPIIPAVFIGGEFVGGANEIISLHLQRSLQPLLKNAGALWSLFNDFGVNPVVYELDEIPRGQEVEQVLTALGCGMVPAVFIGGELVGGTNEIMSLQLKRVLKPMLIRAGALWV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005912`
TK1151 ID	TkA01G007600
OH-1004 ID	LXL04_005912
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005912

Location Chr01:175626371-175630841 (-)

Description Similar to GRXS2: Monothiol glutaredoxin-S2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18600`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15680`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15700`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15690`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15670`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005912 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0010167 response to nitrate Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0046872 metal ion binding Molecular Function

GO:0051537 2 iron, 2 sulfur cluster binding Molecular Function

KEGG gene cross-reference

ath:AT4G15680

ath:AT4G15700

ath:AT5G18600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.665

Rank 1 · LXL04_005912 · OH-1004

Nucleus0.333

Rank 2 · LXL04_005912 · OH-1004

Cell membrane0.104

Rank 3 · LXL04_005912 · OH-1004

Mitochondrion0.065

Rank 4 · LXL04_005912 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_005912 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00462.31Glutaredoxin13-75 aa

PF00462.31Glutaredoxin103-147 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005912	`PF00462.31`	Glutaredoxin	13	75	6.4e-18	65.4
LXL04_005912	`PF00462.31`	Glutaredoxin	103	147	6.4e-18	65.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L8Z8`	Arabidopsis thaliana	Monothiol glutaredoxin-S2	73.267%	Swiss-Prot	moderate database homology
`O23419`	Arabidopsis thaliana	Monothiol glutaredoxin-S4	65.347%	Swiss-Prot	moderate database homology
`O23421`	Arabidopsis thaliana	Monothiol glutaredoxin-S3	64.356%	Swiss-Prot	moderate database homology
`O23420`	Arabidopsis thaliana	Monothiol glutaredoxin-S5	64.356%	Swiss-Prot	moderate database homology
`Q6NLU2`	Arabidopsis thaliana	Monothiol glutaredoxin-S7	62.376%	Swiss-Prot	moderate database homology

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