LXL04_005757 | RubberDandelionOmics

Gene overview

LXL04_005757

Reference: OH-1004 Chr: Chr01 Coordinates: 172869067-172872095 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

822 bp · LXL04_005757|LXL04_005757|OH1004|cDNA

ATGGGTTTTAGGTCTAATTCCGCCAACGCCATCGTCAACGTCGCCGCTTGTGAAAAAACCCAcaccattgtggatgctctaataTTATCCATTTTGGGATTGCAAAAAGATATCGTGATGCAACAACCCATCGACACATCCCTTACAGGTATACCTTCAACTCACTATATATGGACTTTCCTAAAGGAGAACAAAAATTTAACTGGAACAGCACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAAAGCCGACG...

CDS

Download CDS FASTA

822 bp · LXL04_005757|LXL04_005757|OH1004|CDS

ATGGGTTTTAGGTCTAATTCCGCCAACGCCATCGTCAACGTCGCCGCTTGTGAAAAAACCCACACCATTGTGGATGCTCTAATATTATCCATTTTGGGATTGCAAAAAGATATCGTGATGCAACAACCCATCGACACATCCCTTACAGGTATACCTTCAACTCACTATATATGGACTTTCCTAAAGGAGAACAAAAATTTAACTGGAACAGCACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAAAGCCGACG...

Protein

Download Protein FASTA

273 aa · LXL04_005757|LXL04_005757|OH1004|PROTEIN

MGFRSNSANAIVNVAACEKTHTIVDALILSILGLQKDIVMQQPIDTSLTGIPSTHYIWTFLKENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLFFLRGRYPFCCDGLKAATKKQKYDKICEKILSTPFEGPDYGFLKRVFRELLTGEGFEFDYIFDWTILKYQQSQKNKTQPHALPGHGENSIEAIRKDLEKHQAGSTDGRVALKYFNPSSQNTDGNFGDFVTGDNKGYMPKFENSIASLSYKLQPWRRVSGCCF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005757`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005757

Location Chr01:172869067-172872095 (-)

Description Similar to CKL4: Casein kinase 1-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28860`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At4g28880`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At5g57015`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At4g26100`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At1g72710`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005757 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G72710

ath:AT4G26100

ath:AT4G28860

ath:AT4G28880

ath:AT5G57015

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.443

Rank 1 · LXL04_005757 · OH-1004

Nucleus0.422

Rank 2 · LXL04_005757 · OH-1004

Mitochondrion0.131

Rank 3 · LXL04_005757 · OH-1004

Cell membrane0.084

Rank 4 · LXL04_005757 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_005757 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPI7`	Arabidopsis thaliana	Casein kinase 1-like protein 4	58.788%	Swiss-Prot	moderate database homology
`Q93Z18`	Arabidopsis thaliana	Casein kinase 1-like protein 3	50.732%	Swiss-Prot	moderate database homology
`Q8VYK9`	Arabidopsis thaliana	Casein kinase 1-like protein 12	60.448%	Swiss-Prot	weak database homology
`P42158`	Arabidopsis thaliana	Casein kinase 1-like protein 1	57.343%	Swiss-Prot	weak database homology
`Q9CAI5`	Arabidopsis thaliana	Casein kinase 1-like protein 2	56.291%	Swiss-Prot	weak database homology

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