LXL04_005741 | RubberDandelionOmics

Gene overview

LXL04_005741

Reference: OH-1004 Chr: Chr01 Coordinates: 172570320-172573082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2151 bp · LXL04_005741|LXL04_005741|OH1004|cDNA

ATGGAAGATCTGATGGCTGATTATACGACTGACCTTCGACACCTGTGTGATGACCAAATCCAGTACAAGTCTTCCCGATCGCCGAATGAAGACGTGCTCTCCAAATTCCTTGCAACATTAACAACACAACATAGTTTCTCCGAACCTGAATCTGATCATGGAATGTTTGTTTTTTGGAGCCAAAACTTACCGTCACAAAATAATCCTGATTCCGGCGATCTTGGGTTGGTTCACAACGCTATAAAATCCGCATTTTCTAA...

CDS

Download CDS FASTA

2151 bp · LXL04_005741|LXL04_005741|OH1004|CDS

ATGGAAGATCTGATGGCTGATTATACGACTGACCTTCGACACCTGTGTGATGACCAAATCCAGTACAAGTCTTCCCGATCGCCGAATGAAGACGTGCTCTCCAAATTCCTTGCAACATTAACAACACAACATAGTTTCTCCGAACCTGAATCTGATCATGGAATGTTTGTTTTTTGGAGCCAAAACTTACCGTCACAAAATAATCCTGATTCCGGCGATCTTGGGTTGGTTCACAACGCTATAAAATCCGCATTTTCTAA...

Protein

Download Protein FASTA

716 aa · LXL04_005741|LXL04_005741|OH1004|PROTEIN

MEDLMADYTTDLRHLCDDQIQYKSSRSPNEDVLSKFLATLTTQHSFSEPESDHGMFVFWSQNLPSQNNPDSGDLGLVHNAIKSAFSKVDLCYFDGFIQFWAPVEAGGKSLLTTYDQPFAVQYLNSGIEKYRLCSLSYQYNIDASKLEVEDVPFIINGAVANAFLNHLAEVVLDLRVHHGSPLALSALACEFICSFLLPICDPSQSRCVGVVECCATKLDHLFKIFNDLNRALKVGFNILLQSLHNLIANVEITLIWVIFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005741`
TK1151 ID	TkA01G019350
OH-1004 ID	LXL04_005741
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.500
Protein coverage (%)	TK1151 100.000 / OH-1004 99.441 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005741

Location Chr01:172570320-172573082 (-)

Description Similar to NLP7: Protein NLP7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24020`	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal.	The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2008.03695.x
`At1g64530`	Probable transcription factor.	No verified direct reference in this release
`At1g76350`	Probable transcription factor.	No verified direct reference in this release
`At1g20640`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0131100`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005741 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010167 response to nitrate Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000987 cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0001046 core promoter sequence-specific DNA binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G64530

ath:AT4G24020

dosa:Os03g0131100

osa:4331508

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.581

Rank 1 · LXL04_005741 · OH-1004

Cytoplasm0.394

Rank 2 · LXL04_005741 · OH-1004

Cell membrane0.116

Rank 3 · LXL04_005741 · OH-1004

Endoplasmic reticulum0.067

Rank 4 · LXL04_005741 · OH-1004

Golgi apparatus0.029

Rank 5 · LXL04_005741 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22922.3GAF_NLP293-455 aa

PF02042.22RWP-RK548-594 aa

PF00564.31PB1632-708 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005741	`PF22922.3`	GAF_NLP	293	455	2.6e-20	73.3
LXL04_005741	`PF02042.22`	RWP-RK	548	594	2.7e-11	44.2
LXL04_005741	`PF00564.31`	PB1	632	708	2.9e-13	50.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TH9`	Arabidopsis thaliana	Protein NLP7	26.455%	Swiss-Prot	weak database homology
`Q8RWY4`	Arabidopsis thaliana	Protein NLP6	25.122%	Swiss-Prot	weak database homology
`Q9SFW8`	Arabidopsis thaliana	Protein NLP5	22.662%	Swiss-Prot	weak database homology
`Q9LE38`	Arabidopsis thaliana	Protein NLP4	21.970%	Swiss-Prot	weak database homology
`Q10S83`	Oryza sativa subsp. japonica	Protein NLP1	22.727%	Swiss-Prot	weak database homology

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