LXL04_005149 | RubberDandelionOmics

Gene overview

LXL04_005149

Reference: OH-1004 Chr: Chr01 Coordinates: 156505869-156508853 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1251 bp · LXL04_005149|LXL04_005149|OH1004|cDNA

ATGAATTCAGAAAATCATCACAACGACAGTTCCATTCCCAATCCCTATTTGAACACTCGCAGACACCAACCACGAAAACGCGATCATGATCGTCAACTACAGCAACAGTATTCTTCAGCTGCTACGGGCAACGATGATGGTTCTCAGGCCGGAAGAATGGAGGAGACAGTAACGGTGGCAGAAGTTTCCAGAATGGAAGATACTATTTCCTCTCTCTATTCCATTCCGGTGGGGTACCGATTTTTCCCTACTGACAGAGA...

CDS

Download CDS FASTA

1251 bp · LXL04_005149|LXL04_005149|OH1004|CDS

ATGAATTCAGAAAATCATCACAACGACAGTTCCATTCCCAATCCCTATTTGAACACTCGCAGACACCAACCACGAAAACGCGATCATGATCGTCAACTACAGCAACAGTATTCTTCAGCTGCTACGGGCAACGATGATGGTTCTCAGGCCGGAAGAATGGAGGAGACAGTAACGGTGGCAGAAGTTTCCAGAATGGAAGATACTATTTCCTCTCTCTATTCCATTCCGGTGGGGTACCGATTTTTCCCTACTGACAGAGA...

Protein

Download Protein FASTA

416 aa · LXL04_005149|LXL04_005149|OH1004|PROTEIN

MNSENHHNDSSIPNPYLNTRRHQPRKRDHDRQLQQQYSSAATGNDDGSQAGRMEETVTVAEVSRMEDTISSLYSIPVGYRFFPTDRELIKYFLMKKIKNEVIPENKIIDVDIYQNHPERIVENHPEVTEGHWYFFSSRIRRYTNGKRPARTAGPGYWKATGSEKEVLDDDGTVIGSKISLDYRVGKQPNGIKTNWLMKEYVVEGHKRQRLDKKDMKLDDYVLCKMYKTKRKENGEKERVAITSNNEDEIPTICDANQDQN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005149`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005149

Location Chr01:156505869-156508853 (-)

Description Similar to NAC081: Protein ATAF2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04070`	Required for normal seed development and morphology.	No verified direct reference in this release
`At5g08790`	Involved in disease resistance response.	The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02488.x Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses.2009 · DOI: 10.1128/jvi.00941-09 ATAF2, a NAC transcription factor, binds to the promoter and regulates NIT2 gene expression involved in auxin biosynthesis.2012 · DOI: 10.1007/s10059-012-0122-2 ATAF2 integrates Arabidopsis brassinosteroid inactivation and seedling photomorphogenesis.2015 · DOI: 10.1242/dev.124347
`At4g27410`	May participate in stress responses and transcriptional regulation of associated genes.	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter.2004 · DOI: 10.1105/tpc.104.022699 Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.2018 · DOI: 10.1111/nph.15127
`At5g63790`	May be involved in regulation of seed germination under flooding.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005149 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008361 regulation of cell size Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

KEGG gene cross-reference

ath:AT3G04070

ath:AT4G27410

ath:AT5G08790

ath:AT5G63790

sly:543526

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.943

Rank 1 · LXL04_005149 · OH-1004

Cytoplasm0.122

Rank 2 · LXL04_005149 · OH-1004

Cell membrane0.044

Rank 3 · LXL04_005149 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_005149 · OH-1004

Plastid0.012

Rank 5 · LXL04_005149 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM76-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005149	`PF02365.21`	NAM	76	201	1.9e-34	119.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TD6`	Arabidopsis thaliana	NAC transcription factor 47	38.693%	Swiss-Prot	weak database homology
`Q9C598`	Arabidopsis thaliana	Protein ATAF2	42.771%	Swiss-Prot	weak database homology
`Q93VY3`	Arabidopsis thaliana	NAC domain-containing protein 72	42.458%	Swiss-Prot	weak database homology
`Q8H115`	Arabidopsis thaliana	NAC domain-containing protein 102	42.236%	Swiss-Prot	weak database homology

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