LXL04_005138 | RubberDandelionOmics

Gene overview

LXL04_005138

Reference: OH-1004 Chr: Chr01 Coordinates: 156087155-156090390 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1353 bp · LXL04_005138|LXL04_005138|OH1004|cDNA

ATGTCCATGAATGCTCTCACTGCAACGACTAGGAACTTCCGTTATGCTTCTCGTCTTCTCGGCCTCGATGCTAAGCTCGAGACGAGTCTCTTGCTCCCTTTTAGAGAAATCAAGGTGGAGTGCACATTCCCGAAGGATGATGGATCATTGAAGTCTCATGTCGGGTTCAGAGTTCAACACGATAATGCTCGTGGTCCGATGAAAGGAGGAATCAGATACCATCATAAGGTTGACATTGACGAGGTTAAAGCCTTGGCTCA...

CDS

Download CDS FASTA

1353 bp · LXL04_005138|LXL04_005138|OH1004|CDS

ATGTCCATGAATGCTCTCACTGCAACGACTAGGAACTTCCGTTATGCTTCTCGTCTTCTCGGCCTCGATGCTAAGCTCGAGACGAGTCTCTTGCTCCCTTTTAGAGAAATCAAGGTGGAGTGCACATTCCCGAAGGATGATGGATCATTGAAGTCTCATGTCGGGTTCAGAGTTCAACACGATAATGCTCGTGGTCCGATGAAAGGAGGAATCAGATACCATCATAAGGTTGACATTGACGAGGTTAAAGCCTTGGCTCA...

Protein

Download Protein FASTA

450 aa · LXL04_005138|LXL04_005138|OH1004|PROTEIN

MSMNALTATTRNFRYASRLLGLDAKLETSLLLPFREIKVECTFPKDDGSLKSHVGFRVQHDNARGPMKGGIRYHHKVDIDEVKALAQLMSWKTAVMNLPYGGAKGGIDCTPNELSKSELERLTRVFTQKLHDVIGTNLDVPAPDMGTNSQTMAWILDEYSKFHGYSPACVTGKPLELGGSLGRESATGHGVAISTEALLNDHGKSIKDSTFVIQGYGNVGSWAAKMIYEKGGKIVAVSDVTGAVKNPNGINILELSLHRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005138`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005138

Location Chr01:156087155-156090390 (+)

Description Similar to GDH: Glutamate dehydrogenase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07440`	Glutamate dehydrogenase 2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0543900`	Glutamate dehydrogenase 2, mitochondrial.	No verified direct reference in this release
`UniProt: A2XW22`	Glutamate dehydrogenase 2, mitochondrial.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005138 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006520 amino acid metabolic process Biological Process

GO:0006538 L-glutamate catabolic process Biological Process

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010446 response to alkaline pH Biological Process

GO:1901698 response to nitrogen compound Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004352 glutamate dehydrogenase (NAD+) activity Molecular Function

KEGG gene cross-reference

ath:AT5G07440

vvi:100257914

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.421

Rank 1 · LXL04_005138 · OH-1004

Cytoplasm0.371

Rank 2 · LXL04_005138 · OH-1004

Nucleus0.130

Rank 3 · LXL04_005138 · OH-1004

Peroxisome0.127

Rank 4 · LXL04_005138 · OH-1004

Plastid0.064

Rank 5 · LXL04_005138 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02812.24ELFV_dehydrog_N35-161 aa

PF00208.28ELFV_dehydrog178-410 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005138	`PF02812.24`	ELFV_dehydrog_N	35	161	4.5e-51	172.7
LXL04_005138	`PF00208.28`	ELFV_dehydrog	178	410	1.3e-77	261.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38946`	Arabidopsis thaliana	Glutamate dehydrogenase 2	75.182%	Swiss-Prot	strong database homology
`Q33E23`	Oryza sativa subsp. japonica	Glutamate dehydrogenase 2, mitochondrial	74.939%	Swiss-Prot	strong database homology
`A2XW22`	Oryza sativa subsp. indica	Glutamate dehydrogenase 2, mitochondrial	74.939%	Swiss-Prot	strong database homology

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