LXL04_003080 | RubberDandelionOmics

Gene overview

LXL04_003080

Reference: OH-1004 Chr: Chr01 Coordinates: 66894023-66897340 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1530 bp · LXL04_003080|LXL04_003080|OH1004|cDNA

atggcTACATTTAAGAAAAAATTAAAGAAGAAAAGCTTCCACTGTGTATTATTATTGAAAATATATTGGGTCAAGTGGACTGTGAGGCCAGCAAGACAAGCCTCGTGTCTCTTCTCGCTGCCCCATGTGAATGTGATATTTTGCTTCCATCACCACCCCctaatttcttcttcttctgcttcttctttaCGATATTCATTTTTCGATACAAGAAAGGCAAGCAAAGAAACACTCCAAGTTCCACCTCTTCCACAACTAGC...

CDS

Download CDS FASTA

1530 bp · LXL04_003080|LXL04_003080|OH1004|CDS

ATGGCTACATTTAAGAAAAAATTAAAGAAGAAAAGCTTCCACTGTGTATTATTATTGAAAATATATTGGGTCAAGTGGACTGTGAGGCCAGCAAGACAAGCCTCGTGTCTCTTCTCGCTGCCCCATGTGAATGTGATATTTTGCTTCCATCACCACCCCCTAATTTCTTCTTCTTCTGCTTCTTCTTTACGATATTCATTTTTCGATACAAGAAAGGCAAGCAAAGAAACACTCCAAGTTCCACCTCTTCCACAACTAGC...

Protein

Download Protein FASTA

509 aa · LXL04_003080|LXL04_003080|OH1004|PROTEIN

MATFKKKLKKKSFHCVLLLKIYWVKWTVRPARQASCLFSLPHVNVIFCFHHHPLISSSSASSLRYSFFDTRKASKETLQVPPLPQLAPTYRRGGTDSNAERFGVFYTIKEGSRSPPALLGLSTSYLSGIAGFPTLPYMLPYLGYLQKQKTGKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIKNKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEEFMNSLFKEHKIDYIIHGDDPCLLPDGSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003080`
TK1151 ID	TkA01G396370
OH-1004 ID	LXL04_003080
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 93.571 / OH-1004 77.210 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003080

Location Chr01:66894023-66897340 (-)

Description Similar to PECT1: Ethanolamine-phosphate cytidylyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38670`	Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine.	Defects in CTP:PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE affect embryonic and postembryonic development in Arabidopsis.2006 · DOI: 10.1105/tpc.106.040840

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003080 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006646 phosphatidylethanolamine biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0004306 ethanolamine-phosphate cytidylyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38670

bta:510274

ddi:DDB_G0270298

hsa:5833

mmu:68671

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.615

Rank 1 · LXL04_003080 · OH-1004

Plastid0.199

Rank 2 · LXL04_003080 · OH-1004

Cytoplasm0.102

Rank 3 · LXL04_003080 · OH-1004

Peroxisome0.078

Rank 4 · LXL04_003080 · OH-1004

Nucleus0.071

Rank 5 · LXL04_003080 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01467.33CTP_transf_like158-287 aa

PF01467.33CTP_transf_like346-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003080	`PF01467.33`	CTP_transf_like	158	287	5.9e-45	153.4
LXL04_003080	`PF01467.33`	CTP_transf_like	346	445	5.9e-45	153.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVI9`	Arabidopsis thaliana	Ethanolamine-phosphate cytidylyltransferase	67.297%	Swiss-Prot	strong database homology

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