LXL04_002699 | RubberDandelionOmics

Gene overview

LXL04_002699

Reference: OH-1004 Chr: Chr01 Coordinates: 55369765-55371530 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

672 bp · LXL04_002699|LXL04_002699|OH1004|cDNA

ATGCTCTGGATCTTCGATTTGGTCACGACTAGGGTTTCTTACAAAGATGAAACCGGGGAATTTGTTCTTGCTCTGCATCTAGCGGCCATATGCACACCAGCGGATTACAATACGCTTCCTCTTGACACTATATACAGCAATTTCATTGACGGTCTCCCAGTGGTAAGTATTGATTTGATTTATACGTACGTGATAGGCGACGACTGTTGTTCCTCTTCAAAGGGTGAAGGATGTTGTAACACGTTAGAACCGCTGCAGCT...

CDS

Download CDS FASTA

672 bp · LXL04_002699|LXL04_002699|OH1004|CDS

ATGCTCTGGATCTTCGATTTGGTCACGACTAGGGTTTCTTACAAAGATGAAACCGGGGAATTTGTTCTTGCTCTGCATCTAGCGGCCATATGCACACCAGCGGATTACAATACGCTTCCTCTTGACACTATATACAGCAATTTCATTGACGGTCTCCCAGTGGTAAGTATTGATTTGATTTATACGTACGTGATAGGCGACGACTGTTGTTCCTCTTCAAAGGGTGAAGGATGTTGTAACACGTTAGAACCGCTGCAGCT...

Protein

Download Protein FASTA

223 aa · LXL04_002699|LXL04_002699|OH1004|PROTEIN

MLWIFDLVTTRVSYKDETGEFVLALHLAAICTPADYNTLPLDTIYSNFIDGLPVVSIDLIYTYVIGDDCCSSSKGEGCCNTLEPLQLISIDTTSAPPFRVFASQPTAPYDSILTSYFFTAEGAENGLQFTIVRPFNWIGPRMDFIPGTDGLSDGVPRVLACFSNVYSKVSGEDPIKTPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGNCCFHPAGDEVRA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002699`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002699

Location Chr01:55369765-55371530 (+)

Description Similar to Os01g0969100: UDP-D-apiose/UDP-D-xylose synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08200`	Together with AXS1, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction.	UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.2020 · DOI: 10.1111/tpj.14921
`At2g27860`	Together with AXS2, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction.	The biosynthesis of the branched-chain sugar d-apiose in plants: functional cloning and characterization of a UDP-d-apiose/UDP-d-xylose synthase from Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01841.x Deciphering the enzymatic mechanism of sugar ring contraction in UDP-apiose biosynthesis.2019 · DOI: 10.1038/s41929-019-0382-8 UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.2020 · DOI: 10.1111/tpj.14921

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0969100`	Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002699 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009226 nucleotide-sugar biosynthetic process Biological Process

GO:0033320 UDP-D-xylose biosynthetic process Biological Process

GO:0033352 UDP-D-apiose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016831 carboxy-lyase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08200

ath:AT2G27860

dosa:Os01g0969100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.282

Rank 1 · LXL04_002699 · OH-1004

Nucleus0.280

Rank 2 · LXL04_002699 · OH-1004

Extracellular0.160

Rank 3 · LXL04_002699 · OH-1004

Plastid0.158

Rank 4 · LXL04_002699 · OH-1004

Endoplasmic reticulum0.098

Rank 5 · LXL04_002699 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGE0`	Arabidopsis thaliana	UDP-D-apiose/UDP-D-xylose synthase 2	49.669%	Swiss-Prot	moderate database homology
`Q9ZUY6`	Arabidopsis thaliana	UDP-D-apiose/UDP-D-xylose synthase 1	49.669%	Swiss-Prot	moderate database homology
`Q8S9Z2`	Oryza sativa subsp. japonica	UDP-D-apiose/UDP-D-xylose synthase	50.968%	Swiss-Prot	moderate database homology

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