LXL04_002245 | RubberDandelionOmics

Gene overview

LXL04_002245

Reference: OH-1004 Chr: Chr01 Coordinates: 44541278-44542907 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1143 bp · LXL04_002245|LXL04_002245|OH1004|cDNA

ATGGACCAGCAGCGAAAGAGCTTTTGCACAATGGCGGATGCGTATGGAGTTATCTTAGACTCTCCGAGCCTCCATAAGAACCTCGACGTTGTGCTCTTGGGTCATCATCACGCTAAGGATGATTGCTTTCAGTTTGATTTTAAGCTTCCCGACATTCGACGACCAATCTCTAATTTTGTAAAGACAAGAGAAGCAGGGGAATTTCTCAGTGGTGCTTTAGCTGGAGCCATGACCAAAGCTGTTCTTGCTCCTCTCGAAAC...

CDS

Download CDS FASTA

1143 bp · LXL04_002245|LXL04_002245|OH1004|CDS

ATGGACCAGCAGCGAAAGAGCTTTTGCACAATGGCGGATGCGTATGGAGTTATCTTAGACTCTCCGAGCCTCCATAAGAACCTCGACGTTGTGCTCTTGGGTCATCATCACGCTAAGGATGATTGCTTTCAGTTTGATTTTAAGCTTCCCGACATTCGACGACCAATCTCTAATTTTGTAAAGACAAGAGAAGCAGGGGAATTTCTCAGTGGTGCTTTAGCTGGAGCCATGACCAAAGCTGTTCTTGCTCCTCTCGAAAC...

Protein

Download Protein FASTA

380 aa · LXL04_002245|LXL04_002245|OH1004|PROTEIN

MDQQRKSFCTMADAYGVILDSPSLHKNLDVVLLGHHHAKDDCFQFDFKLPDIRRPISNFVKTREAGEFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKTISGSFLQVIEKQGWQGLWAGNAINMIRIVPTQAIELGTFECVKRVMTSAKEKFSKEDPSIQIGQVNLSFPLSWLSPVALGGAAAGFVSTLVCHPLEVLKVITVSRQNSAVNRAQYTANDRLTVSPDTYPNLSIAVSKIYKSGGIGSFYAGLSPTLIGMLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002245`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002245

Location Chr01:44541278-44542907 (-)

Description Similar to At3g20240: Probable mitochondrial adenine nucleotide transporter BTL1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20240`	Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP.	No verified direct reference in this release
`At4g32400`	Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP, but not ADP-glucose.	Isolation and characterization of shs1, a sugar-hypersensitive and ABA-insensitive mutant with multiple stress responses.2007 · DOI: 10.1007/s11103-007-9219-y

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002245 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015866 ADP transport Biological Process

GO:0015867 ATP transport Biological Process

GO:0035349 coenzyme A transmembrane transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0080121 AMP transport Biological Process

GO:0090480 purine nucleotide-sugar transmembrane transport Biological Process

GO:1990559 mitochondrial coenzyme A transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT3G20240

ath:AT4G32400

xtr:780169

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.892

Rank 1 · LXL04_002245 · OH-1004

Cytoplasm0.045

Rank 2 · LXL04_002245 · OH-1004

Plastid0.032

Rank 3 · LXL04_002245 · OH-1004

Nucleus0.030

Rank 4 · LXL04_002245 · OH-1004

Cell membrane0.026

Rank 5 · LXL04_002245 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153.33Mito_carr67-148 aa

PF00153.33Mito_carr178-277 aa

PF00153.33Mito_carr289-375 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002245	`PF00153.33`	Mito_carr	67	148	2.4e-60	201.0
LXL04_002245	`PF00153.33`	Mito_carr	178	277	2.4e-60	201.0
LXL04_002245	`PF00153.33`	Mito_carr	289	375	2.4e-60	201.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJX5`	Arabidopsis thaliana	Probable mitochondrial adenine nucleotide transporter BTL1	70.122%	Swiss-Prot	strong database homology
`Q9SUV1`	Arabidopsis thaliana	Adenine nucleotide transporter BT1, chloroplastic/mitochondrial	37.261%	Swiss-Prot	moderate database homology

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