LXL04_002052 | RubberDandelionOmics

Gene overview

LXL04_002052

Reference: OH-1004 Chr: Chr01 Coordinates: 40986815-40989383 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

727 bp · LXL04_002052|LXL04_002052|OH1004|cDNA

TTTCAAATGTTTCCTCTGCATTTCATCGATCTGTAAAGGGTGGGTGGGTTCCGATTTCAAATGTTTCCTCTTCCGCTTCTTATAAGCCCTAGACTGAAGACTCCGATTTCGAGTGAGAGGGTGGGTTCCGATTTCGAGTGGGTTCCTTCATCTCCTCGCAGCCCCTTCAATTGCAACCTCCGCGAACCCCTTCCCTCAGCCTCCTCCGCTGCCGCCTCCGCCTGCCCTTTCTACTTCGGCTCCGGTGGATGTGTAGATGC...

CDS

Download CDS FASTA

624 bp · LXL04_002052|LXL04_002052|OH1004|CDS

ATGTTTCCTCTTCCGCTTCTTATAAGCCCTAGACTGAAGACTCCGATTTCGAGTGAGAGGGTGGGTTCCGATTTCGAGTGGGTTCCTTCATCTCCTCGCAGCCCCTTCAATTGCAACCTCCGCGAACCCCTTCCCTCAGCCTCCTCCGCTGCCGCCTCCGCCTGCCCTTTCTACTTCGGCTCCGGTGGATGTGTAGATGCTGTATCAGCAGCAATTGAAACCTTGGAGAATGATCCATGCACAAATGCTGGAAGAGGTTC...

Protein

Download Protein FASTA

207 aa · LXL04_002052|LXL04_002052|OH1004|PROTEIN

MFPLPLLISPRLKTPISSERVGSDFEWVPSSPRSPFNCNLREPLPSASSAAASACPFYFGSGGCVDAVSAAIETLENDPCTNAGRGSNLTEDVHVECDASVMDGKSGTFGAVGAVPEKLCNGDKWTSQAGAKWTKIHPQQQQPNKRESDNSSSTAAAQGQNGQKQPPRMSSKNRKEPNNSSNTAGPPSTQDRGRKAKNYLQKLPPFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002052`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002052

Location Chr01:40986815-40989383 (+)

Description Similar to At4g00590: Putative threonine aspartase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00590`	Putative threonine aspartase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002052 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0033345 L-asparagine catabolic process via L-aspartate Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051604 protein maturation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004067 asparaginase activity Molecular Function

GO:0004298 threonine-type endopeptidase activity Molecular Function

GO:0008798 beta-aspartyl-peptidase activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT4G00590

hsa:55617

mcf:101866084

mmu:75812

rno:246307

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.410

Rank 1 · LXL04_002052 · OH-1004

Cytoplasm0.366

Rank 2 · LXL04_002052 · OH-1004

Mitochondrion0.138

Rank 3 · LXL04_002052 · OH-1004

Cell membrane0.083

Rank 4 · LXL04_002052 · OH-1004

Extracellular0.078

Rank 5 · LXL04_002052 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01112.24Asparaginase_261-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002052	`PF01112.24`	Asparaginase_2	61	115	3.2e-14	53.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65268`	Arabidopsis thaliana	Putative threonine aspartase	80.357%	Swiss-Prot	weak database homology

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