LXL04_002002 | RubberDandelionOmics

Gene overview

LXL04_002002

Reference: OH-1004 Chr: Chr01 Coordinates: 38809573-38810232 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

594 bp · LXL04_002002|LXL04_002002|OH1004|cDNA

ATGAGAACTCAAGGGTTTCGTTCCTCAAACAACACATTGTACGGGTTTGTTGTAGCATCTCCTCCCCTTCAACCCTCTTTCCGTCACCATACTCAAACCGCCGCCACCACCCAGGGCGGGTTCTTCAACCACGACGAGATAGAGAGACATACAGAAATAGAGAAAGGGAGACGAACAGGATCGAGAGGGAGAGAGGATAGTCGGAGGTCTTGTCGGAGGACATCTGGTAGCGGATGTCCTGCTTCACTTGTTCTCGTCAA...

CDS

Download CDS FASTA

594 bp · LXL04_002002|LXL04_002002|OH1004|CDS

ATGAGAACTCAAGGGTTTCGTTCCTCAAACAACACATTGTACGGGTTTGTTGTAGCATCTCCTCCCCTTCAACCCTCTTTCCGTCACCATACTCAAACCGCCGCCACCACCCAGGGCGGGTTCTTCAACCACGACGAGATAGAGAGACATACAGAAATAGAGAAAGGGAGACGAACAGGATCGAGAGGGAGAGAGGATAGTCGGAGGTCTTGTCGGAGGACATCTGGTAGCGGATGTCCTGCTTCACTTGTTCTCGTCAA...

Protein

Download Protein FASTA

197 aa · LXL04_002002|LXL04_002002|OH1004|PROTEIN

MRTQGFRSSNNTLYGFVVASPPLQPSFRHHTQTAATTQGGFFNHDEIERHTEIEKGRRTGSRGREDSRRSCRRTSGSGCPASLVLVKFAERWLSSTSTTDNPYATVLLFHNKRAIELGTGCGVAAMGVYLLGLKDVVLTDIAPVMPALKHNLKRNKTVLGKMLKMAQLHWTNSEQIKALKPPFDIVIAADVVYIEES

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002002`
TK1151 ID	TkA01G492590
OH-1004 ID	LXL04_002002
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.400
Protein coverage (%)	TK1151 100.000 / OH-1004 89.340 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002002

Location Chr01:38809573-38810232 (-)

Description Similar to VCPKMT: Protein-lysine methyltransferase METTL21D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35987`	Catalyzes the trimethylation of calmodulin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002002 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002239 response to oomycetes Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009630 gravitropism Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT4G35987

cel:CELE_C42C1.13

mmu:207965

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.453

Rank 1 · LXL04_002002 · OH-1004

Nucleus0.451

Rank 2 · LXL04_002002 · OH-1004

Mitochondrion0.110

Rank 3 · LXL04_002002 · OH-1004

Cell membrane0.058

Rank 4 · LXL04_002002 · OH-1004

Endoplasmic reticulum0.053

Rank 5 · LXL04_002002 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10294.16Methyltransf_1683-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002002	`PF10294.16`	Methyltransf_16	83	196	3.1e-16	60.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JNX3`	Arabidopsis thaliana	Calmodulin-lysine N-methyltransferase	35.165%	Swiss-Prot	weak database homology

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