Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1020 bp · LXL04_001982|LXL04_001982|OH1004|cDNA
ATGGCAGAATTCAAGGTCATTGGAGTGATCGGCGCCGGCCAAATGGGCTCCGGGATAGCTCAACTGGCGGCGGTGGCCGGTGCCGATGTGCGACTACTCGACAAAGACGCCCAAGCTCTCCTCAGTGCCAAGAGATCTATCTCCGACTCTGTTCAACGTTTTGTCTCCAAAGGTCAACTCTCCAAGGAGGTAGGGGCTGACGCTGTAGCTCGTGTGAAATACACATCGAATCTAGAAGATCTCCAATCTGCAGATATAGT...
1020 bp · LXL04_001982|LXL04_001982|OH1004|CDS
ATGGCAGAATTCAAGGTCATTGGAGTGATCGGCGCCGGCCAAATGGGCTCCGGGATAGCTCAACTGGCGGCGGTGGCCGGTGCCGATGTGCGACTACTCGACAAAGACGCCCAAGCTCTCCTCAGTGCCAAGAGATCTATCTCCGACTCTGTTCAACGTTTTGTCTCCAAAGGTCAACTCTCCAAGGAGGTAGGGGCTGACGCTGTAGCTCGTGTGAAATACACATCGAATCTAGAAGATCTCCAATCTGCAGATATAGT...
Protein
Download Protein FASTA339 aa · LXL04_001982|LXL04_001982|OH1004|PROTEIN
MAEFKVIGVIGAGQMGSGIAQLAAVAGADVRLLDKDAQALLSAKRSISDSVQRFVSKGQLSKEVGADAVARVKYTSNLEDLQSADIVIEAIVESEDVKKKLFSELDKIVKQSAILASNTSSISITRLASATKRPHQVIGMHFMNPPPIMKLVEIIRGADTSDNTFNATKTLAERFGKTVVCSQDYAGFIVNRILMPMINEAFYTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSILKVLHSGLGDPKYTPC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001982 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001982 |
|---|---|
| Location | Chr01:38409705-38411559 (+) |
| Description | Similar to hbdA: 3-hydroxybutyryl-CoA dehydrogenase (Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006635 fatty acid beta-oxidation Biological Process GO:0019605 butyrate metabolic process Biological Process GO:0030435 sporulation resulting in formation of a cellular spore Biological Process GO:0008691 3-hydroxybutyryl-CoA dehydrogenase activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0070403 NAD+ binding Molecular Function |
| KEGG gene cross-reference | bja:blr1379 bsu:BSU24160 cac:CA_C2708 dra:DR_1068 ttm:Tthe_1657 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02737.253HCDH_N7-184 aaPF00725.283HCDH187-283 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001982 | PF02737.25 | 3HCDH_N | 7 | 184 | 2.1e-65 | 220.8 |
| LXL04_001982 | PF00725.28 | 3HCDH | 187 | 283 | 6.6e-35 | 120.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.