LXL04_001143 | RubberDandelionOmics

Gene overview

LXL04_001143

Reference: OH-1004 Chr: Chr01 Coordinates: 21000003-21003774 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2976 bp · LXL04_001143|LXL04_001143|OH1004|cDNA

ATGAGGGTGATCAAGTTCCAAGCATGGGAAGAACATTTTAATAAAAGGATTCTGGCCTTTCGTGAGTCTGAATACGGGTGGCTTACCAAATTCATGACCTCACTGGGTGGAAATCTGATTGTTTTGTGGAGCACCCCTTTGTTTGTCTCTTCTCTCACCTTTGGGAGTGCAATTTTGTTTGGAATCCCACTTGATGCCGGGACGGTGTTCACTGCCACATCAGTGATTAAGAATCTGCAGGAGCCCCTTAGAACGTTCCC...

CDS

Download CDS FASTA

2976 bp · LXL04_001143|LXL04_001143|OH1004|CDS

ATGAGGGTGATCAAGTTCCAAGCATGGGAAGAACATTTTAATAAAAGGATTCTGGCCTTTCGTGAGTCTGAATACGGGTGGCTTACCAAATTCATGACCTCACTGGGTGGAAATCTGATTGTTTTGTGGAGCACCCCTTTGTTTGTCTCTTCTCTCACCTTTGGGAGTGCAATTTTGTTTGGAATCCCACTTGATGCCGGGACGGTGTTCACTGCCACATCAGTGATTAAGAATCTGCAGGAGCCCCTTAGAACGTTCCC...

Protein

Download Protein FASTA

991 aa · LXL04_001143|LXL04_001143|OH1004|PROTEIN

MRVIKFQAWEEHFNKRILAFRESEYGWLTKFMTSLGGNLIVLWSTPLFVSSLTFGSAILFGIPLDAGTVFTATSVIKNLQEPLRTFPQSMISLSQAIISLGRLDDFMMSKELDQGAVERKEDCSGTTAVEVKDGSFSWDDEAAEGGVVKNLNFNIKKGELAAIVGTVGSGKSSLLSSVIGEMHKISGKVRVCGSTAYVAQTSWIQNGTIQENILFGLPMDKQKYKEVIKSCSLEKDLEMMEFGDQTEIGERGINLSGGQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001143`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001143

Location Chr01:21000003-21003774 (+)

Description Similar to ABCC4: ABC transporter C family member 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47800`	Involved in the regulation of stomatal aperture.	No verified direct reference in this release
`At3g62700`	Pump for glutathione S-conjugates.	No verified direct reference in this release
`At1g04120`	Pump for glutathione S-conjugates.	The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement.2001 · DOI: 10.1093/emboj/20.8.1875 The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use.2003 · DOI: 10.1046/j.1365-313x.2003.016012.x Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance.2004 · DOI: 10.1104/pp.103.027045 The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage.2009 · DOI: 10.1074/jbc.m109.030247
`At3g13080`	Pump for glutathione S-conjugates.	An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity.1998 · DOI: 10.1046/j.1365-313x.1998.00076.x
`At3g13090`	Pump for glutathione S-conjugates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001143 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009624 response to nematode Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010118 stomatal movement Biological Process

GO:0030007 intracellular potassium ion homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G04120

ath:AT2G47800

ath:AT3G13080

ath:AT3G13090

ath:AT3G62700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.329

Rank 1 · LXL04_001143 · OH-1004

Lysosome / Vacuole0.298

Rank 2 · LXL04_001143 · OH-1004

Cytoplasm0.170

Rank 3 · LXL04_001143 · OH-1004

Endoplasmic reticulum0.170

Rank 4 · LXL04_001143 · OH-1004

Golgi apparatus0.112

Rank 5 · LXL04_001143 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005.34ABC_tran148-281 aa

PF00664.29ABC_membrane432-676 aa

PF00005.34ABC_tran767-914 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001143	`PF00005.34`	ABC_tran	148	281	2.5e-49	168.1
LXL04_001143	`PF00664.29`	ABC_membrane	432	676	1.1e-30	108.0
LXL04_001143	`PF00005.34`	ABC_tran	767	914	2.5e-49	168.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7DM58`	Arabidopsis thaliana	ABC transporter C family member 4	73.088%	Swiss-Prot	strong database homology
`Q9LZJ5`	Arabidopsis thaliana	ABC transporter C family member 14	70.680%	Swiss-Prot	strong database homology
`Q7GB25`	Arabidopsis thaliana	ABC transporter C family member 5	45.294%	Swiss-Prot	moderate database homology
`Q9LK64`	Arabidopsis thaliana	ABC transporter C family member 3	47.100%	Swiss-Prot	moderate database homology
`Q8VZZ4`	Arabidopsis thaliana	ABC transporter C family member 6	46.115%	Swiss-Prot	moderate database homology

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