LXL04_000636 | RubberDandelionOmics

Gene overview

LXL04_000636

Reference: OH-1004 Chr: Chr01 Coordinates: 11586672-11590026 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1329 bp · LXL04_000636|LXL04_000636|OH1004|cDNA

ATGCTAAGTTTCACATGCACACAACACAACACACCAAAAAGTAGCCATTCTTCCATATCCACCAAAATTCCTTCCCCTTTCCACCTTCTTCCCACCAAAACCCTCAACCAAGCTACACCATCTTCTCCAATGGCGTTTTCCTCCATCTTCAGACCTTTTACGTCTACTTGTATATGTATCTTATCCTTCAACTTTCTATTACTAGCTTCATCTGCTAGATTACCTCATCCTATCCACAACCATGGCGATATTCCCCGCCA...

CDS

Download CDS FASTA

1329 bp · LXL04_000636|LXL04_000636|OH1004|CDS

ATGCTAAGTTTCACATGCACACAACACAACACACCAAAAAGTAGCCATTCTTCCATATCCACCAAAATTCCTTCCCCTTTCCACCTTCTTCCCACCAAAACCCTCAACCAAGCTACACCATCTTCTCCAATGGCGTTTTCCTCCATCTTCAGACCTTTTACGTCTACTTGTATATGTATCTTATCCTTCAACTTTCTATTACTAGCTTCATCTGCTAGATTACCTCATCCTATCCACAACCATGGCGATATTCCCCGCCA...

Protein

Download Protein FASTA

442 aa · LXL04_000636|LXL04_000636|OH1004|PROTEIN

MLSFTCTQHNTPKSSHSSISTKIPSPFHLLPTKTLNQATPSSPMAFSSIFRPFTSTCICILSFNFLLLASSARLPHPIHNHGDIPRHKEPIRQSNHSECALFMGSWVHDESYPIYKASACPIIDPEFNCQMYGRPDSDYLKYRWRPANCELPRFDGLEFLTKMKGKKVMFVGDSLGRNQWESLICMTWSAVPQVATKMIRGDPLSTFKFLVKRFTDFNYSDYEVDVSFYRAPYLVDIVAVDGRRVLKLEEITKNARAWMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000636`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000636

Location Chr01:11586672-11590026 (+)

Description Similar to PMR5: Protein PMR5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58600`	Required for nonhost resistance (NHR) during plant-microbe interactions.	Mutations in PMR5 result in powdery mildew resistance and altered cell wall composition.2004 · DOI: 10.1111/j.1365-313x.2004.02264.x AGB1 and PMR5 contribute to PEN2-mediated preinvasion resistance to Magnaporthe oryzae in Arabidopsis thaliana.2009 · DOI: 10.1094/mpmi-22-11-1331
`At2g30010`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g31110`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000636 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G30010

ath:AT2G31110

ath:AT2G34070

ath:AT5G58600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.150

Rank 1 · LXL04_000636 · OH-1004

Golgi apparatus0.146

Rank 2 · LXL04_000636 · OH-1004

Endoplasmic reticulum0.122

Rank 3 · LXL04_000636 · OH-1004

Extracellular0.118

Rank 4 · LXL04_000636 · OH-1004

Plastid0.083

Rank 5 · LXL04_000636 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N98-150 aa

PF13839.13PC-Esterase151-438 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000636	`PF14416.12`	PMR5N	98	150	1.3e-22	80.6
LXL04_000636	`PF13839.13`	PC-Esterase	151	438	2.1e-89	301.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LUZ6`	Arabidopsis thaliana	Protein PMR5	59.773%	Swiss-Prot	strong database homology
`O80872`	Arabidopsis thaliana	Protein trichome birefringence-like 45	57.867%	Swiss-Prot	strong database homology
`Q8VY22`	Arabidopsis thaliana	Protein trichome birefringence-like 38	51.576%	Swiss-Prot	strong database homology
`O22960`	Arabidopsis thaliana	Protein trichome birefringence-like 37	49.296%	Swiss-Prot	moderate database homology
`Q67XC4`	Arabidopsis thaliana	Protein trichome birefringence-like 40	46.802%	Swiss-Prot	moderate database homology

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