LXL04_000194 | RubberDandelionOmics

Gene overview

LXL04_000194

Reference: OH-1004 Chr: Chr01 Coordinates: 3869729-3872518 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

750 bp · LXL04_000194|LXL04_000194|OH1004|cDNA

ATGAGCAGCATAGGAACAGGTTACGATCTATCGGTTACAACCTTCTCGCCGGACGGTAGGGTTTTTCAGATCGAGTACGCTGCTAAAGCTGTTGATAATAGCGGCACAGTCGTCGGCATCAAATGCAAAGATGGCATTGTTATTggAGTAGAGAAGCTGATTGCGTCGAAGATGATGCTGCCTGGATCTAATCGTAGAATCCACTCCGTGCATCGTCATTCTGGGATGGGTGTAGCTGGATTAGCTGCAGACGGCAGACA...

CDS

Download CDS FASTA

750 bp · LXL04_000194|LXL04_000194|OH1004|CDS

ATGAGCAGCATAGGAACAGGTTACGATCTATCGGTTACAACCTTCTCGCCGGACGGTAGGGTTTTTCAGATCGAGTACGCTGCTAAAGCTGTTGATAATAGCGGCACAGTCGTCGGCATCAAATGCAAAGATGGCATTGTTATTGGAGTAGAGAAGCTGATTGCGTCGAAGATGATGCTGCCTGGATCTAATCGTAGAATCCACTCCGTGCATCGTCATTCTGGGATGGGTGTAGCTGGATTAGCTGCAGACGGCAGACA...

Protein

Download Protein FASTA

249 aa · LXL04_000194|LXL04_000194|OH1004|PROTEIN

MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVIGVEKLIASKMMLPGSNRRIHSVHRHSGMGVAGLAADGRQIVARAKSEAQNYESTYGEPIPVKELADRVASYVHLCTLYWWLRPFGSGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKTFELEMSWVCDESNRQHQKVPEALLEEAKAAAKAALEEMDAD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000194`
TK1151 ID	TkA01G628030
OH-1004 ID	LXL04_000194
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000194

Location Chr01:3869729-3872518 (+)

Description Similar to PAG1: Proteasome subunit alpha type-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27020`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0811100`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000194 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010498 proteasomal protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005839 proteasome core complex Cellular Component

GO:0019773 proteasome core complex, alpha-subunit complex Cellular Component

KEGG gene cross-reference

ath:AT2G27020

ddi:DDB_G0267408

dosa:Os01g0811100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.697

Rank 1 · LXL04_000194 · OH-1004

Nucleus0.627

Rank 2 · LXL04_000194 · OH-1004

Mitochondrion0.056

Rank 3 · LXL04_000194 · OH-1004

Cell membrane0.043

Rank 4 · LXL04_000194 · OH-1004

Endoplasmic reticulum0.033

Rank 5 · LXL04_000194 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10584.15Proteasome_A_N8-30 aa

PF00227.32Proteasome31-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000194	`PF10584.15`	Proteasome_A_N	8	30	1.4e-13	51.0
LXL04_000194	`PF00227.32`	Proteasome	31	216	3.3e-53	180.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23715`	Arabidopsis thaliana	Proteasome subunit alpha type-3	88.353%	Swiss-Prot	strong database homology
`Q9LSU0`	Oryza sativa subsp. japonica	Proteasome subunit alpha type-3	87.550%	Swiss-Prot	strong database homology

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