Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3771 bp · LXL04_000004|LXL04_000004|OH1004|cDNA
ATGTCTACGTGGCAAATATTCTCAGACGCCGGGAATAGTTTCCGGTGGCAATGCTCCCACATCAAGCTCTCAAGTGAGCCACCAAAAGCCCTAATCGAGAAACCTAGATCTCCACACCATCTCCCTTCTATCGCCGATCTCTTGGTTCAAGGATTCTCAAAGCTATATGAGGATCAAAGTGATGAAATTGAGACCCCTCCGTCTTTCCAAAATGGATTGGGGAAACCAGTTGTCGTGAATCAACCTTCCTTGGTAAAAGC...
3771 bp · LXL04_000004|LXL04_000004|OH1004|CDS
ATGTCTACGTGGCAAATATTCTCAGACGCCGGGAATAGTTTCCGGTGGCAATGCTCCCACATCAAGCTCTCAAGTGAGCCACCAAAAGCCCTAATCGAGAAACCTAGATCTCCACACCATCTCCCTTCTATCGCCGATCTCTTGGTTCAAGGATTCTCAAAGCTATATGAGGATCAAAGTGATGAAATTGAGACCCCTCCGTCTTTCCAAAATGGATTGGGGAAACCAGTTGTCGTGAATCAACCTTCCTTGGTAAAAGC...
Protein
Download Protein FASTA1256 aa · LXL04_000004|LXL04_000004|OH1004|PROTEIN
MSTWQIFSDAGNSFRWQCSHIKLSSEPPKALIEKPRSPHHLPSIADLLVQGFSKLYEDQSDEIETPPSFQNGLGKPVVVNQPSLVKASSILEDQDDEATVLSKTNQNGEIETPPTIRTGLGKPVVVKESSMVKASSILGDQDDVATVLPKTNQNGEIETPPTFRTGLGKPVVVKQSSLVKAAAILGDQNDEFSVGYSKLHENQIGEIETPPTFRTGSGKPVTVKQSSMVKASSIVGDEDDRSNFLSKSGYSKLHENQNGE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000004 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000004 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:91872-97366 (-) | |||||||||
| Description | Similar to BRCA2B: Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009553 embryo sac development Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0031347 regulation of defense response Biological Process GO:0048314 embryo sac morphogenesis Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0003697 single-stranded DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G00020 ath:AT5G01630 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00634.24BRCA2468-495 aaPF09169.16BRCA-2_helical727-773 aaPF09103.17BRCA-2_OB1798-868 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000004 | PF00634.24 | BRCA2 | 468 | 495 | 3.4e-40 | 135.7 |
| LXL04_000004 | PF09169.16 | BRCA-2_helical | 727 | 773 | 1.8e-14 | 54.5 |
| LXL04_000004 | PF09103.17 | BRCA-2_OB1 | 798 | 868 | 2.8e-19 | 69.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.