TkAUNG097700 | RubberDandelionOmics

Gene overview

TkAUNG097700

Reference: TK1151 Chr: ChrUn Coordinates: 27585851-27588731 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2051 bp · TkAUNG097700|TK1151|cDNA

ATTTACTTCAACGTCCAAAAACGCCAAAAATAACAGCTTCAAAAATCTCTCCATCACAAAATCGCTGCAACGTCAATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAA...

CDS

Download CDS FASTA

1611 bp · TkAUNG097700|TK1151|CDS

ATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAATAGTTCATGTGGGAGGAATCAGTTATGGAAGGTCAGGTCGGATGTCAAATCGGACCCGTACGAACTTTCCCAGTC...

Protein

Download Protein FASTA

536 aa · TkAUNG097700|TK1151|PROTEIN

MACSSIAMDRRALPISLHSIPKRQRPPDTLVSRNSGSNTNSKLHFRVRVQFLSGSYVHVHLNSSCGRNQLWKVRSDVKSDPYELSQSAPESFKFKEKLGVGAMTKDDDGDEFVDNALPWWEEFPKRWTIVILCFSAFLLCNMDRVNMSIAILPMSSEFHWNSTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKRVLAFGVIWWSVATILTPIAAKLGLPFLLIVRAFMGIGEGVAMPAMNNLLSKWVPVAERSRSLALVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG097700`
TK1151 ID	TkAUNG097700
OH-1004 ID	LXL04_000615
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG097700

Location ChrUn:27585851-27588731 (-)

Description Similar to ANTR1: Sodium-dependent phosphate transport protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29650`	Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner.	Arabidopsis ANTR1 is a thylakoid Na+-dependent phosphate transporter: functional characterization in Escherichia coli.2008 · DOI: 10.1074/jbc.m709371200
`At4g00370`	Inorganic phosphate and probable anion transporter.	AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis.2015 · DOI: 10.1038/ncomms6928
`At2g38060`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release
`At5g20380`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0279700`	Probable anion transporter.	No verified direct reference in this release
`Os09g0570400`	Probable anion transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006811 monoatomic ion transport Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009624 response to nematode Biological Process

GO:0010028 xanthophyll cycle Biological Process

GO:0015882 L-ascorbic acid transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

KEGG gene cross-reference

ath:AT2G29650

ath:AT2G38060

ath:AT4G00370

dosa:Os01g0279700

dosa:Os09g0570400

osa:4326905

osa:4347913

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.944

Rank 1 · TkAUNG097700 · TK1151

Mitochondrion0.039

Rank 2 · TkAUNG097700 · TK1151

Golgi apparatus0.032

Rank 3 · TkAUNG097700 · TK1151

Peroxisome0.029

Rank 4 · TkAUNG097700 · TK1151

Cytoplasm0.026

Rank 5 · TkAUNG097700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_1133-495 aa

PF05977MFS_3134-304 aa

PF06779MFS_4152-293 aa

PF00083Sugar_tr161-289 aa

PF12420DUF3671354-379 aa

PF05977MFS_3425-475 aa

PF00083Sugar_tr478-523 aa

PF07690MFS_1480-526 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG097700	`PF07690`	MFS_1	133	495	2.9e-61	208.0
TkAUNG097700	`PF05977`	MFS_3	134	304	0.00047	19.5
TkAUNG097700	`PF06779`	MFS_4	152	293	0.29	11.1
TkAUNG097700	`PF00083`	Sugar_tr	161	289	5.8e-05	22.9
TkAUNG097700	`PF12420`	DUF3671	354	379	0.64	10.2
TkAUNG097700	`PF05977`	MFS_3	425	475	0.00047	19.5
TkAUNG097700	`PF00083`	Sugar_tr	478	523	5.8e-05	22.9
TkAUNG097700	`PF07690`	MFS_1	480	526	2.9e-61	208.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82390`	Arabidopsis thaliana	sp\|O82390\|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic	71.600%	Swiss-Prot	High
`Q8GX78`	Arabidopsis thaliana	sp\|Q8GX78\|ANTR2_ARATH Ascorbate transporter, chloroplastic	80.200%	Swiss-Prot	High
`Q7XJR2`	Arabidopsis thaliana	sp\|Q7XJR2\|ANTR3_ARATH Probable anion transporter 3, chloroplastic	43.300%	Swiss-Prot	Medium
`Q3E9A0`	Arabidopsis thaliana	sp\|Q3E9A0\|ANTR6_ARATH Probable anion transporter 6, chloroplastic	47.800%	Swiss-Prot	Medium
`Q9SDI4`	Oryza sativa subsp. japonica	sp\|Q9SDI4\|PHT41_ORYSJ Probable anion transporter 1, chloroplastic	84.100%	Swiss-Prot	High
`Q652N5`	Oryza sativa subsp. japonica	sp\|Q652N5\|PHT44_ORYSJ Probable anion transporter 4, chloroplastic	73.000%	Swiss-Prot	High

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