Gene Card
Gene overview
cDNA / CDS / Protein Sequences
999 bp · TkAUNG097120|TK1151|cDNA
ATGGACTTCACCCCACCATCAGACCCTCCTACTATTCAACCCAACCCCATTTCTTCAATCCCTTCTTCTGGTAGCAGTAAGCTTCCAATTAAGCGCAAAACCCCCACATCTACTCTAATCCTTACATCCCCCAAACTCGAATCCGACGACGACGACGCCGATCCCGATCCCGATCCCGACCATGACGTCATCGCCAGGCAGCCTCCTTTCAAATTTCATCGGATTTGGACCGAGCCGGACGAGATCCGCTTCCTCCAGGG...
999 bp · TkAUNG097120|TK1151|CDS
ATGGACTTCACCCCACCATCAGACCCTCCTACTATTCAACCCAACCCCATTTCTTCAATCCCTTCTTCTGGTAGCAGTAAGCTTCCAATTAAGCGCAAAACCCCCACATCTACTCTAATCCTTACATCCCCCAAACTCGAATCCGACGACGACGACGCCGATCCCGATCCCGATCCCGACCATGACGTCATCGCCAGGCAGCCTCCTTTCAAATTTCATCGGATTTGGACCGAGCCGGACGAGATCCGCTTCCTCCAGGG...
Protein
Download Protein FASTA332 aa · TkAUNG097120|TK1151|PROTEIN
MDFTPPSDPPTIQPNPISSIPSSGSSKLPIKRKTPTSTLILTSPKLESDDDDADPDPDPDHDVIARQPPFKFHRIWTEPDEIRFLQGLLDCTSQGLSFPRDLGIFYAQFSHGMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDKGMLSPQDRALYDLSKQLWEPDHPFLPSVVTNSNCKPADNHNCKSNFPSTSMAVLALPSVIKETNNRHKFNNFGGDGVKGGFNGDVKFSDVNVELERNVEVVRKEAKAKSGGGDL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG097120 |
|---|---|
| TK1151 ID | TkAUNG097120 |
| OH-1004 ID | LXL04_000868 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 41.800 |
| Protein coverage (%) | TK1151 28.012 / OH-1004 24.561Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG097120 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:27433114-27434145 (+) | |||||||||
| Description | Similar to At5g28040: Probable transcription factor At5g28040 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0042742 defense response to bacterium Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G11510 ath:AT3G04930 ath:AT4G00390 ath:AT4G01260 ath:AT5G28040 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04504GeBP-like_DBD72-165 aaPF04504GeBP-like_DBD283-292 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG097120 | PF04504 | GeBP-like_DBD | 72 | 165 | 1.7e-22 | 80.6 |
| TkAUNG097120 | PF04504 | GeBP-like_DBD | 283 | 292 | 1.7e-22 | 80.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.