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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG096290
Reference: TK1151 Chr: ChrUn Coordinates: 27231377-27232366 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

753 bp · TkAUNG096290|TK1151|cDNA

ATGTACTCAAAATGTGGGTGTATTCAAGATTCCGTAAAAGCATTTTCAGAAACTAAAATCCCGGATAATGTACTTTACAGCTCAATGATTGCAGCTTACGGGTTTCATGGAATGGGAAAAAAGGCGGTTGATTTATTTGAATTAATGGAAAAAGAAAAATTAGAACCGAATAATGTCACTTTCGTGAGTTTACTTTACGCTTGTAGTCATTGCGGATTAAAAGACAAAGGGCCTCATGACTCAGCATCATACGTCCTCCT...

CDS

Download CDS FASTA

753 bp · TkAUNG096290|TK1151|CDS

ATGTACTCAAAATGTGGGTGTATTCAAGATTCCGTAAAAGCATTTTCAGAAACTAAAATCCCGGATAATGTACTTTACAGCTCAATGATTGCAGCTTACGGGTTTCATGGAATGGGAAAAAAGGCGGTTGATTTATTTGAATTAATGGAAAAAGAAAAATTAGAACCGAATAATGTCACTTTCGTGAGTTTACTTTACGCTTGTAGTCATTGCGGATTAAAAGACAAAGGGCCTCATGACTCAGCATCATACGTCCTCCT...

Protein

Download Protein FASTA

250 aa · TkAUNG096290|TK1151|PROTEIN

MYSKCGCIQDSVKAFSETKIPDNVLYSSMIAAYGFHGMGKKAVDLFELMEKEKLEPNNVTFVSLLYACSHCGLKDKGPHDSASYVLLSNIQASAKKWQNVSDFRKEMRDRGVKKEPGVSWFEMKNEVHEFCMSDKSHKDSKKIDEYLKKLTLEMKLLGYKPDMGSHLHDMDVEEKEDDLVHHSEKLAIAFALMNTPDCVPIRIMKNLRVCNDCHVAIKFISAIKKREIIVRDASRFHHFKEGECSCGDYW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG096290
TK1151 IDTkAUNG096290
OH-1004 IDLXL04_019165
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)40.100
Protein coverage (%)TK1151 99.600 / OH-1004 25.057
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG096290
LocationChrUn:27231377-27232366 (+)
DescriptionSimilar to PCMP-H81: Pentatricopeptide repeat-containing protein At3g57430, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41080 Pentatricopeptide repeat-containing protein At2g41080. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At3g63370 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019165 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G57430
ath:AT4G13650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.360
Rank 1 · TkAUNG096290 · TK1151
Nucleus0.255
Rank 2 · TkAUNG096290 · TK1151
Cytoplasm0.160
Rank 3 · TkAUNG096290 · TK1151
Plastid0.118
Rank 4 · TkAUNG096290 · TK1151
Peroxisome0.025
Rank 5 · TkAUNG096290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR2-17 aa
PF13041PPR_221-69 aa
PF12854PPR_121-50 aa
PF13812PPR_322-68 aa
PF01535PPR24-53 aa
PF23276TPR_2424-67 aa
PF20431E_motif46-69 aa
PF12854PPR_154-65 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG096290PF01535PPR2173e-1040.3
TkAUNG096290PF13041PPR_221694.5e-1453.0
TkAUNG096290PF12854PPR_121500.0002121.7
TkAUNG096290PF13812PPR_322681e-0526.2
TkAUNG096290PF01535PPR24533e-1040.3
TkAUNG096290PF23276TPR_2424670.1712.5
TkAUNG096290PF20431E_motif46691.5e-1557.9
TkAUNG096290PF12854PPR_154650.0002121.7
TkAUNG096290PF01535PPR59763e-1040.3
TkAUNG096290PF20431E_motif771221.5e-1557.9
TkAUNG096290PF01535PPR921123e-1040.3
TkAUNG096290PF13812PPR_3921131e-0526.2
TkAUNG096290PF13041PPR_2941134.5e-1453.0
TkAUNG096290PF20430Eplus_motif1271540.01815.5
TkAUNG096290PF13041PPR_21491634.5e-1453.0
TkAUNG096290PF14432DYW_deaminase1582503.3e-42142.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8S9M4Arabidopsis thalianasp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g4108048.500%Swiss-ProtMedium
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151036.400%Swiss-ProtMedium
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106537.300%Swiss-ProtMedium
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207044.600%Swiss-ProtMedium
Q9M1V3Arabidopsis thalianasp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic35.200%Swiss-ProtMedium

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