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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG095920
Reference: TK1151 Chr: ChrUn Coordinates: 27118127-27120556 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2350 bp · TkAUNG095920|TK1151|cDNA

AAATAGAATAATTTATTCATTTTTATGAAAAAGACTTATTTCGCTTTTCACTTTGTAAAACATGCTCTATATCACACTTCTTTCCCGCGTAACCTTCTCTCCATCTTGTCTAATGGAGGTTTTCCACTCTCTTTGTCTCCTCCTCCTCCTCCTCCTCCCACTTTCTCTCTCCATCTCCACCACCGACGACGCCGACGGTGACACCGCTGCCTTATCTCTATTCCGGTCTCAAACCGACACTCATGGCATCCTCCTCTTTA...

CDS

Download CDS FASTA

2052 bp · TkAUNG095920|TK1151|CDS

ATGCTCTATATCACACTTCTTTCCCGCGTAACCTTCTCTCCATCTTGTCTAATGGAGGTTTTCCACTCTCTTTGTCTCCTCCTCCTCCTCCTCCTCCCACTTTCTCTCTCCATCTCCACCACCGACGACGCCGACGGTGACACCGCTGCCTTATCTCTATTCCGGTCTCAAACCGACACTCATGGCATCCTCCTCTTTAACTGGACCCTCTCTTCCACCACTCACTCCACCGCCTGCTCCGCCTCCTGGACAGGTGTCCA...

Protein

Download Protein FASTA

683 aa · TkAUNG095920|TK1151|PROTEIN

MLYITLLSRVTFSPSCLMEVFHSLCLLLLLLLPLSLSISTTDDADGDTAALSLFRSQTDTHGILLFNWTLSSTTHSTACSASWTGVQCTNNRVTAVSLPSLNLRGPLDSLSSLEQLRILDLRDNRLNGTVLPLANCTNLKLVYLSGNDLSGPIPTEIASLSRLLRVDLSDNNLVGPIPEGISKLNRLITLSLENNEISGEIPMSISSLSNIKQLNLSNNQLYGHLPENIAQKFGDSSFSGNKGLCGSSPLPACSATTPPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG095920
TK1151 IDTkAUNG095920
OH-1004 IDLXL04_032582
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG095920
LocationChrUn:27118127-27120556 (+)
DescriptionSimilar to PXC1: Leucine-rich repeat receptor-like protein kinase PXC1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g36570 Leucine-rich repeat receptor-like protein kinase involved in secondary cell wall formation in xylem fibers.
The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway.2013 · DOI: 10.1186/1471-2229-13-94
At1g68400 Probable leucine-rich repeat receptor-like protein kinase At1g68400. No verified direct reference in this release
At5g58300 Probable inactive receptor kinase At5g58300. No verified direct reference in this release
At3g08680 Probable inactive receptor kinase At3g08680. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009834 plant-type secondary cell wall biogenesis Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009898 cytoplasmic side of plasma membrane Cellular Component
GO:0016328 lateral plasma membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G68400
ath:AT2G26730
ath:AT2G36570
ath:AT3G08680
ath:AT5G58300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.873
Rank 1 · TkAUNG095920 · TK1151
Endoplasmic reticulum0.080
Rank 2 · TkAUNG095920 · TK1151
Cytoplasm0.073
Rank 3 · TkAUNG095920 · TK1151
Nucleus0.059
Rank 4 · TkAUNG095920 · TK1151
Lysosome / Vacuole0.021
Rank 5 · TkAUNG095920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_245-89 aa
PF12799LRR_490-130 aa
PF29594LRR_SKP293-169 aa
PF23952LRR_EndoS107-171 aa
PF23598LRR_14108-218 aa
PF13855LRR_8108-126 aa
PF14580LRR_9109-124 aa
PF00560LRR_1115-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG095920PF08263LRRNT_245890.001219.8
TkAUNG095920PF12799LRR_4901302.3e-0937.9
TkAUNG095920PF29594LRR_SKP2931690.0513.6
TkAUNG095920PF23952LRR_EndoS1071710.04314.7
TkAUNG095920PF23598LRR_141082181.2e-0731.6
TkAUNG095920PF13855LRR_81081261.7e-0731.6
TkAUNG095920PF14580LRR_91091240.1912.0
TkAUNG095920PF00560LRR_11151327e-1449.7
TkAUNG095920PF12799LRR_41151502.3e-0937.9
TkAUNG095920PF13855LRR_81151731.7e-0731.6
TkAUNG095920PF13516LRR_61161279.07.3
TkAUNG095920PF13516LRR_61351519.07.3
TkAUNG095920PF12799LRR_41371782.3e-0937.9
TkAUNG095920PF00560LRR_11381607e-1449.7
TkAUNG095920PF14580LRR_91582210.1912.0
TkAUNG095920PF13855LRR_81622211.7e-0731.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJQ1Arabidopsis thalianasp|Q9SJQ1|PXC1_ARATH Leucine-rich repeat receptor-like protein kinase PXC162.200%Swiss-ProtHigh
Q9M9C5Arabidopsis thalianasp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g6840048.400%Swiss-ProtMedium
Q9LVM0Arabidopsis thalianasp|Q9LVM0|Y5830_ARATH Probable inactive receptor kinase At5g5830051.000%Swiss-ProtHigh
Q9C9Y8Arabidopsis thalianasp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g0868048.300%Swiss-ProtMedium
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673056.300%Swiss-ProtLow

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