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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG089900
Reference: TK1151 Chr: ChrUn Coordinates: 25526731-25530017 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3192 bp · TkAUNG089900|TK1151|cDNA

TAGAAGTGGTTCACACACTCAATTCGTGCATCTCATCCAAATTACACACACATATGGACACAATCCAAAGAAGGAAGACAGGGTCATCTCCAGGCTCGACTGCCCTTAAACAACAATCACCTCTTCTTCAATCTTGAGTCACACCCAATCTACCCAGTTCATATAAACCATCGATTTCTGTCCCCTTTTTCTTCCAAAACCCTTAAAGTTTTAATCTATGGAGGGCACATTCCTCCCGAACAGACCAGCGCTCCCTCTAC...

CDS

Download CDS FASTA

2577 bp · TkAUNG089900|TK1151|CDS

ATGGAGGGCACATTCCTCCCGAACAGACCAGCGCTCCCTCTACAATTGACAAAACCCACACAATCAAACCAACAACAAAGACTCGGATTCAATCCAGTAACTCTCCCTCCACAACCACCGTCTCCGCAATCTTTCCCCATTGATCCTCTCGTCCAGCACCTTGTCCACCTCTCTTCGCCACCGCCAACCACCACCCACAAACAAAAACCTATACGATCACTAAAATCAAGCAACACCCAGTTCCCTTCTACTCGCAGCTA...

Protein

Download Protein FASTA

858 aa · TkAUNG089900|TK1151|PROTEIN

MEGTFLPNRPALPLQLTKPTQSNQQQRLGFNPVTLPPQPPSPQSFPIDPLVQHLVHLSSPPPTTTHKQKPIRSLKSSNTQFPSTRSYSRKNALNRTHFKKNYSTSVLTLEETKVQLAGIDGDAEGSLDFLSNECKSMLDSILEQSLSSLNLFFYSVKFKLIELDMVSLLKGLDLSGNWEKALCLFEWVLEDSRTNQSFNLDNQMIELMVKMLGRESQHTIMSKLFDKFDIEDHSLDVRAFTTIIHSHSCTGKYEKAINVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG089900
TK1151 IDTkAUNG089900
OH-1004 IDLXL04_028380
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 39.977 / OH-1004 40.448
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG089900
LocationChrUn:25526731-25530017 (-)
DescriptionSimilar to At2g18940: Pentatricopeptide repeat-containing protein At2g18940, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18940 Pentatricopeptide repeat-containing protein At2g18940, chloroplastic. No verified direct reference in this release
At1g02060 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic. No verified direct reference in this release
At5g48730 Pentatricopeptide repeat-containing protein At5g48730, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028380 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT2G18940
ath:AT5G02860
zma:100302579
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.460
Rank 1 · TkAUNG089900 · TK1151
Plastid0.366
Rank 2 · TkAUNG089900 · TK1151
Nucleus0.077
Rank 3 · TkAUNG089900 · TK1151
Cytoplasm0.027
Rank 4 · TkAUNG089900 · TK1151
Cell membrane0.010
Rank 5 · TkAUNG089900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19438LIN9_C64-112 aa
PF13041PPR_2169-187 aa
PF13424TPR_12173-190 aa
PF01535PPR175-186 aa
PF10366Vps39_1175-221 aa
PF13176TPR_7175-186 aa
PF00637Clathrin188-263 aa
PF00702Hydrolase191-221 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG089900PF19438LIN9_C641120.0912.9
TkAUNG089900PF13041PPR_21691871.5e-116381.1
TkAUNG089900PF13424TPR_121731906.1e-0523.9
TkAUNG089900PF01535PPR1751864.9e-93299.8
TkAUNG089900PF10366Vps39_11752210.005617.7
TkAUNG089900PF13176TPR_71751860.113.5
TkAUNG089900PF00637Clathrin1882630.02615.0
TkAUNG089900PF00702Hydrolase1912210.006117.7
TkAUNG089900PF13812PPR_32232851.2e-101333.5
TkAUNG089900PF17177PPR_long2233024.2e-37128.3
TkAUNG089900PF23276TPR_242303282.8e-37128.3
TkAUNG089900PF10037MRP-S272322860.01714.8
TkAUNG089900PF12854PPR_12332648.8e-88288.4
TkAUNG089900PF13041PPR_22362821.5e-116381.1
TkAUNG089900PF01535PPR2392674.9e-93299.8
TkAUNG089900PF29070MSC6_N2413303e-36126.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64624Arabidopsis thalianasp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940, chloroplastic48.400%Swiss-ProtLow
O81908Arabidopsis thalianasp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic30.400%Swiss-ProtLow
Q9FKC3Arabidopsis thalianasp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic20.900%Swiss-ProtLow

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