TkAUNG084910 | RubberDandelionOmics

Gene overview

TkAUNG084910

Reference: TK1151 Chr: ChrUn Coordinates: 24142192-24143018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · TkAUNG084910|TK1151|cDNA

CATTACATTCACGGGACAAATTGCCATTGTGTCCCACACGTGGATACGTTGGATTACAGCAATAATAGTATAAAATTATGGAACCCTTCAATCAGGCGCACAGTAATTTTACCTGATTGTCCTCGGAGATGCTACTCCGAGGTAGAGGTCGCGTTTGGTTATGACCCAATCGCTGATGATTACAAGGTTGTGAGATTACCCATAATTAATGTAAACCGTGGTGGACGTTCATATGTTTACGCCATGAAGACAGATGCTTG...

CDS

Download CDS FASTA

753 bp · TkAUNG084910|TK1151|CDS

CATTACATTCACGGGACAAATTGCCATTGTGTCCCACACGTGGATACGTTGGATTACAGCAATAATAGTATAAAATTATGGAACCCTTCAATCAGGCGCACAGTAATTTTACCTGATTGTCCTCGGAGATGCTACTCCGAGGTAGAGGTCGCGTTTGGTTATGACCCAATCGCTGATGATTACAAGGTTGTGAGATTACCCATAATTAATGTAAACCGTGGTGGACGTTCATATGTTTACGCCATGAAGACAGATGCTTG...

Protein

Download Protein FASTA

250 aa · TkAUNG084910|TK1151|PROTEIN

HYIHGTNCHCVPHVDTLDYSNNSIKLWNPSIRRTVILPDCPRRCYSEVEVAFGYDPIADDYKVVRLPIINVNRGGRSYVYAMKTDAWCLIDSPMPDFRKVKTKACFVSGALHWLAQRYKKSNWYILTFDLSTHVFSSIVSPHITRTVVPTALRGCLAIIINESSIWVRRDDSWSVEIKLEKNNDVGDLKGVLQLGTTGDLIFDLYSIGYKMYNPNTRACASLVDFDDAYFLLDVAPCVESIQLLDMGISC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG084910`
TK1151 ID	TkAUNG084910
OH-1004 ID	LXL04_006258
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.000
Protein coverage (%)	TK1151 93.200 / OH-1004 73.968 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkAUNG084910`
Location	ChrUn:24142192-24143018 (-)
Description	Similar to At3g06240: F-box/kelch-repeat protein At3g06240
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006258` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference	ath:AT1G32420 ath:AT1G47790 ath:AT3G16210 ath:AT3G23880 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · TkAUNG084910 · TK1151

Nucleus0.382

Rank 2 · TkAUNG084910 · TK1151

Cell membrane0.137

Rank 3 · TkAUNG084910 · TK1151

Endoplasmic reticulum0.071

Rank 4 · TkAUNG084910 · TK1151

Lysosome / Vacuole0.044

Rank 5 · TkAUNG084910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08268FBA_318-177 aa

PF07734FBA_121-145 aa

PF25210Kelch_FKB9571-184 aa

PF11420Subtilosin_A86-97 aa

PF08268FBA_3208-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG084910	`PF08268`	FBA_3	18	177	2.4e-19	70.2
TkAUNG084910	`PF07734`	FBA_1	21	145	2.4e-15	57.1
TkAUNG084910	`PF25210`	Kelch_FKB95	71	184	0.045	14.1
TkAUNG084910	`PF11420`	Subtilosin_A	86	97	0.21	12.5
TkAUNG084910	`PF08268`	FBA_3	208	222	2.4e-19	70.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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